Puccinia graminis: PGTG_21909
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Entry
PGTG_21909 CDS
T02226
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pgr
Puccinia graminis
Pathway
pgr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PGTG_21909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgr03400
]
PGTG_21909
Enzymes [BR:
pgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PGTG_21909
DNA repair and recombination proteins [BR:
pgr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PGTG_21909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
13540747
NCBI-ProteinID:
XP_003889352
UniProt:
H6QT04
LinkDB
All DBs
AA seq
1005 aa
AA seq
DB search
MTIHIKTEDEDEPELKPVKKEYDHDDPLRPLGPSPSFHDLCRILDAMECRREERVSSLTK
HRPKYLKALFEKWRKVYGNDLYPCIRLLLPKHDRNRPMYFLKEFGLGRLYCDALSLDKKT
SSAAKRLLSWKSGAPNQNNNESSAGDFAKVLYKEIDSRSMVAKTLLSIDDINDQLDSLAT
ARSGAKRLEIVKTWLEKITPKDHLWLLKIILQDLRLGLSESVVLCAFHHNAYEYYNICTD
LKTVCHTLHSTHIPLEDTQASLKTFNVFKPMLSKRSTKDLPDIVKLMLSGKHKEFLIEEK
MDGERIQLHKSGEQYQFWSRSGTNYTDIYGANPTIGCLTPFIHSAFKPAVEDVILDGEML
VWDPKKKRILPFGSVKSLKPSSINRDEPRALFKVFDILYLKGKGKPEGTSLINKPLSERR
QVMESGRVFVEIKTRLEFCYSVRGKDTQDIKASFEKILEESGEGLIIKRLDSKYRVNART
DDWYKVKPDYMDELGETFEVLAVGAFWGRGKRGGTFGSFLVALVDNENSDPLQGIFRYKT
LCRVGTGLTTDETTQIMTKLEGKYSNWDKKRPELNPDWLDIGKGSGQTPDVWWHWKDSFV
LTIKGTEIINSYAYGCQFSIRFPRSIRFDMERDIGDCMPYQELLGIANQLQDKNKLGENL
SGHVRKRKRNELSQPTSSLMPLKRSDSHKIFYGAEFWVLQGLEDTAESKSDLEVMLNRNG
GKIIHTVPRPAPDREHFCITRRTDFWDAEKAIRHGLQLVHPQWVHDSMEAGYKIVVTSPK
YAVNTAQPTVENSISQYTSALAVVKKESDSEGGEDWADEQSDATTVAEDRWPNASATEDG
VSDHDLRDESPQLSHAKIEPSESVTDKPLGCEDVPLPNKPLDTKLEAEVKEGIFYPLVFY
LDNKPIAHSSEGPVGNTVSVDPDGESSKLFSQVSRLLKAHGGRIVSDVNDPDSTHIICSP
TDTSRCVDLRRIDKDRPRRRRLVTADWVLDSVEGDSCLYEADYLP
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccacatcaagacagaagatgaagacgagccggagctcaagccagtgaagaag
gaatacgaccatgatgatcccctacgaccccttggaccttcgccctcgttccacgatttg
tgtagaatactcgatgccatggaatgccgcagggaagagagggtatcgtcccttactaag
catcgtccaaagtatttgaaagcactcttcgagaagtggcgcaaggtatacggtaacgac
ttgtatccttgcatccgactgcttctaccaaaacatgatagaaaccgaccaatgtacttt
ttgaaagaattcggcctgggacgattgtactgtgacgctctaagcttggacaagaaaact
tcatctgccgcaaaacgtctcctgagttggaaaagcggagcccctaaccagaacaacaat
gagtcttcggctggggattttgcaaaagtgctctataaagagatcgatagtcggtccatg
gtcgctaaaactctactctcgattgacgacatcaacgaccagctggattccttagccacg
gcgcgttcaggggcgaagagacttgaaattgtcaaaacgtggctcgaaaaaattactccc
aaagatcacctgtggctactcaagatcatcctccaagatctcaggctagggctcagcgaa
tctgtcgttttatgtgcttttcatcataatgcttacgagtattacaacatttgtaccgac
ctcaagactgtttgtcacacccttcattccacacatattcctctggaagacacacaagct
agtttgaaaactttcaacgtcttcaaaccgatgctttctaaaagaagtacgaaagatcta
ccagatattgtcaagttgatgctctcgggaaagcacaaggagtttttgatcgaagagaag
atggatggtgaacgaatccagctccataagagtggcgaacaatatcaattttggtcaagg
agtggtacaaattatacggatatatatggagccaatcctacgattggctgtctgacgcca
tttattcatagtgcgttcaaaccagcggtcgaagatgttatactggacggggaaatgcta
gtatgggatccgaagaagaaaagaatactgccgtttgggagtgtgaagtccttaaagccg
tcttcgattaaccgggatgaaccacgagccttgttcaaggtgtttgatattttgtatctc
aagggaaaaggcaagcctgagggtacaagtctgattaacaagcctttgtcagaaaggagg
caggtgatggagagtgggagggtctttgtcgagattaaaaccagattggagttttgctat
tccgtgcggggtaaggatacgcaagacatcaaggcgagctttgaaaaaatcttggaagaa
agcggtgaaggattgatcatcaagagacttgattccaaatatcgggtcaacgctcggaca
gatgattggtataaggttaagccagattacatggatgaattaggagaaacttttgaagtt
ttagcagttggagcattctggggacgaggaaagaggggaggcacgtttggtagttttcta
gtcgcattagttgacaatgagaactctgacccattgcaaggaattttccgctataaaacc
ctatgtagagtaggaacaggcctcaccactgacgaaacgacgcagatcatgaccaaactt
gaaggaaagtactccaactgggataagaaaaggccagagctcaaccctgattggttggat
attggcaaaggctcgggacaaactcctgatgtttggtggcactggaaagattcatttgtg
ctcacaataaaaggtaccgaaattatcaattcttatgcctatgggtgtcaattttctatc
cgatttcccagatcaattcggttcgacatggagagagatatcggagattgtatgccttat
caagagctcttgggtatcgcaaaccagttacaggacaagaacaagctcggtgaaaatctc
agtggccatgtgagaaaacgaaaacgaaatgaattatctcagccgacatcttcacttatg
cctctgaagcgcagtgattcccacaagatcttttatggggcggaattctgggtactgcaa
ggtctcgaggacactgctgaaagtaaaagtgatctagaggtaatgctgaaccgcaatggg
ggcaagatcattcacacggtccctcgaccagcacctgatcgtgaacatttttgcattacc
cggagaacagatttttgggatgctgaaaaagcgattcgccacggtttgcaattggtacat
ccacagtgggtccatgactcaatggaagcaggctataagatagttgtcacaagtcccaaa
tacgccgttaacacggcccaacctacagttgaaaattccatctcacagtataccagtgct
ttagcagttgtaaagaaagaaagtgactcggagggtggcgaggactgggctgacgagcag
tctgatgcaaccactgtcgccgaagatcgttggccaaatgcaagcgctactgaggacggg
gtcagtgaccatgatctgcgcgatgagtcgcctcagttgtcacatgcaaagattgaacca
tccgaatctgtaacggacaagcccttgggttgtgaagatgtacccttgccaaacaaacca
ctagatactaaactagaggcggaagtcaaagaaggaatcttctatccacttgtattttac
ttggataataagccgattgcccattcttcagaaggcccggttggtaacactgtatcagtt
gaccccgatggtgaatccagcaaattgttctcccaggtttctcgattacttaaagcacat
ggtggtcgaatcgtatctgacgtgaacgatcccgactcaacacatatcatttgtagtccg
actgatacctccagatgtgttgatctcagaagaatagacaaagatcgcccgagaagacgc
agattagtgacggcggattgggtacttgattcagtcgaaggcgattcttgtttatacgaa
gctgattatttgccatga
DBGET
integrated database retrieval system
