Porphyromonas gingivalis TDC60: PGTDC60_1111
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Entry
PGTDC60_1111 CDS
T01516
Name
(GenBank) putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
KO
K01798
Alr-MurF fusion protein [EC:
5.1.1.1
6.3.2.10
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt00300
Lysine biosynthesis
pgt00470
D-Amino acid metabolism
pgt00550
Peptidoglycan biosynthesis
pgt01100
Metabolic pathways
pgt01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PGTDC60_1111
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PGTDC60_1111
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PGTDC60_1111
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
PGTDC60_1111
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgt01011
]
PGTDC60_1111
Enzymes [BR:
pgt01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.1 alanine racemase
PGTDC60_1111
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
PGTDC60_1111
Peptidoglycan biosynthesis and degradation proteins [BR:
pgt01011
]
Precursor biosynthesis
Amino acid ligase
PGTDC60_1111
Racemase
PGTDC60_1111
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ala_racemase_N
Ala_racemase_C
Mur_ligase_M
Motif
Other DBs
NCBI-ProteinID:
BAK25268
LinkDB
All DBs
Position
complement(1152224..1154383)
Genome browser
AA seq
719 aa
AA seq
DB search
MFDIPVIGITGSNGKTIVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGI
FEAGISQMGEMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHCHTIVYNG
DCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPFT
DAASIEDIIHCITLISVLCPEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSNDVY
SLTLALDFQRRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEI
ASHRTCFAGMSAVFFKDVATFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQVHETA
LRINLSAIIHNLNFYRNLVPSGTKTICMVKAQGYGVGSYELVKTLQEHRVDYIAVAVADE
GKELRERGISMPIVVMNPQRNAFQTLIDYGLEPEIYSFALLASFSETVVRNGLVGYPVHI
KIDTGMHRLGFLPSDMTRLGEILAKDAGLSIRSIFTHLAGADDPDLDDFTRSQLLSFDAA
FASLSSLLGYIPLRHVLNTAGVERFADYHADMIRLGIGLYGVTASGVQGLRPVATLMTTI
LQIKDISSSDTVGYGRKGRVQQPSRIAIIPIGYADGLDRRLSCGVGEVLVRGHRCPIVGN
VCMDICMIDVTGMPAEEGDPVVVFGEELPIEEVARKMNTIPYEVLTGISPRVRRVYFQE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatattcctgtgataggaattaccggaagcaatggcaagacaatcgtcaaagag
ttcctttatcagttattgcgcaaggactatcgcattgtccgctcgccccgaagctataac
tcgcagataggagtacccctttccgtatggcaaatggcggaggaacacactctcggtata
tttgaggccggcatatcgcaaatgggggaaatggaacgtttggagagcataatatgcccc
tcgtatggtatcattacgaatataggaggtgctcatcaggagaacttcccggatataaaa
acgaaactggaggaaaagctccgcttgtttctccattgtcatactattgtctataacggc
gactgcgaagagatagctgctgctatctctttctgcggtttggcaagagccggagtttca
tggagccggacgaagcccgaagctcatttgtatgtgtgcagattggaatcgaaagataat
cgcaccgagattgattttcgctgtctcggcaaagattattctcttgtgctaccattcaca
gatgctgcttccatagaagatatcatccattgcatcacactgatttctgtactgtgtccg
gaggtcttatctgctcgaaagcggtttgcaggtttagagcctgtagaaatgcgaatggag
gttaaggccggagatcatggcaatacgatcatcaatgacgtttacagtaatgatgtctat
tcgctcacgctggccttggacttccagcgaagacgtactgccgaaacatgcctaaagaaa
gtgttgatactgtccgacatcttgcaaagcggaatgcctcccgaagaattgtacaggcat
gtggcaggacaattacaagtctatgcccttgactttttcgtcggcatcggagaggaaata
gcctcgcatcgcacttgttttgccggcatgtctgccgtttttttcaaagatgttgctaca
ttcttgacatccggtgagatagagcgcttctccaacagctgtattctgctcaaaggtgca
cgcaagtatcgcttcgaacagattacggagcgacttgtacaacaggtgcacgaaactgcg
ctaaggatcaatctgtcagctatcatccataatcttaatttctatcggaatttagttcca
tcaggcaccaaaaccatctgcatggtcaaggctcagggctatggcgtaggctcttacgaa
cttgtcaaaaccctgcaggagcatcgtgtggattatatagctgtagccgtagcggacgaa
ggcaaagaactaagagagcgaggtatcagtatgcctatcgtggtcatgaacccccaaagg
aatgcctttcagacactcatagactacggattagagcctgagatttatagctttgccctt
ctcgcttctttttcggaaacggtcgtacgcaacggcctcgtgggctatcctgttcatatc
aaaatcgacacgggaatgcaccggcttggttttttaccgtctgatatgacacgactcggt
gagattcttgccaaagatgccggactgagcattcgctctatatttacccatcttgcaggt
gccgacgatcctgatttggatgattttacgcgatctcaactgctgtctttcgatgctgct
ttcgcctctctctcctctttattaggctatatacctctccgtcatgtattgaatacggca
ggggtagagcgttttgccgactaccatgccgacatgattcgtcttggcatcggcttgtat
ggagtaacggcatccggcgtacaaggattgagaccggtagccaccctgatgactacaatt
ttgcagatcaaggatatttcttcgagcgatacggtcggatatggacgtaaaggacgggta
caacaaccatctcgaatagctattatacctatcggttatgccgatggcttggatagacgt
ttgagttgtggagtaggagaagtacttgtgcgtggacatcgctgtcctatagtagggaat
gtctgtatggatatctgtatgatagatgttaccggtatgccggcagaagagggagaccct
gtcgttgtattcggagaagaactcccgatcgaagaagttgcccgtaagatgaatactatc
ccctatgaggtgctcacgggtatctcgcctcgtgttcgcagagtttatttccaagagtag
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