Pectinophora gossypiella (pink bollworm): 126367296
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Entry
126367296 CDS
T09293
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126367296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgw03041
]
126367296
Enzymes [BR:
pgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126367296
Spliceosome [BR:
pgw03041
]
Complex C
Other components
Step II factors
126367296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
ABC_tran
AAA_30
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
126367296
NCBI-ProteinID:
XP_049866701
EnsemblRapid:
LOC126367296
LinkDB
All DBs
Position
6:1999852..2018657
Genome browser
AA seq
1262 aa
AA seq
DB search
MDEVAKLEHLSLVSKICTELDNHLGLNDKDLAEFIIDLADKNPTFDAFKKALIENGAEFS
DSFMTNLLRIIQHMKPTNSATQKCNEPLESKDPLAAKFPGLAIPNDKPQKFSSDEEVSED
EKEEKKGKRLTTKDIFKEEKAKGSGDTVVDQAMAELEALAPSNSISKKQETKKEDVKKHE
RSPSRDRKESRTKKRDSSRDRGRKRSRSRDRRSRSRDRRSRSRDRRSRSRDRRSRDRDRR
KRSRSRHRHRSRSRDRHSRSQSRSRRSRSRGKRPHSRERDEKDRYGDYAKKRKRSPEPEI
SDDPEPGKIYNGRVANIVPFGCFVQIEGVRKRWEGLVHISQLRSEGRVTNVAEVVSRGDK
VKVKVLSVTGQKVSLTMKDVCQDTGKDLNPTSHAHLEAEREGRNPDRPPPAATVLAGLQG
GLDPDEDSSRKRVTRISSPERWEIKQMISSGVIDKSELPDFDEETGLLPKDEDGEADIEI
ELVEEEPPFLQGHGRALHDLSPVRIVKNPDGSLAQAAMMQSALAKERREQKMIQREQEME
SLPTGLNKNWIDPLPETDGRALAANMRGTGITPQDLPEWKKHVIGGKKSSFGKKTNLSLL
EQRQSLPIYKLRDELTKAVADNQILIVIGETGSGKTTQITQYLAECGLTARGKIACTQPR
RVAAMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMDLDLKSY
SVIMLDEAHERTIHTDVLFGLLKQAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPG
RTFPVEVLYTKEPETDYLDASLITCMQIHLREPPGDILLFLTGQEEIDTACEILYERMKS
LGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGF
VKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPE
IQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLIMALEQLHSLSALDSEGLLTRLGRR
MAEFPLEPNLSKILIMSVALQCSDEILTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPE
GDHLTLLAVYNSWRNNKFSNAWCYENFVQIRTLKRAQDVRKQLLGIMDRHKLDVVSAGKN
TVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTK
EYMREVTTIDPKWLVEFAPAFFKFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRR
RN
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtagcaaaattagagcacctttcattggtgtcaaaaatttgcactgagttg
gacaatcatttggggctaaacgacaaagatttggccgaattcatcattgacttggcggac
aaaaatccgacgtttgacgcatttaaaaaggctctgattgaaaatggggcagagttctcg
gactcgttcatgacgaatttacttcgtattatccagcacatgaaaccaacaaactcggcc
actcagaaatgtaatgaacctttagagagcaaagatcccctagctgctaagtttcctggc
ttagccatacctaatgacaaacctcaaaaattttcttccgatgaagaggttagtgaagat
gaaaaagaagaaaagaaaggcaaaagattaactacaaaagacatatttaaagaagaaaaa
gcaaaaggttcaggtgacacagttgttgaccaggcaatggctgaattagaagcattagca
ccttcaaattctataagtaaaaagcaagagaccaagaaagaggatgtcaaaaaacatgaa
agaagtccaagcagagaccgcaaagagagtagaaccaagaaaagggattcttctagagat
agaggcagaaagagatctcggagcagagacaggaggagtcgtagtagagacagaagaagt
cgtagtagagacagaaggagtcgtagtagagacagaaggagtagggatagagacaggagg
aaaaggtcaagaagtcggcatcggcacagatctaggtcccgtgacagacatagtagatcg
cagtcaagaagccgtagatcccggtctagaggaaagagacctcattctagagagagagat
gaaaaagacagatatggagattatgcgaagaagaggaagcgaagcccagaaccagagatc
agtgatgatcctgagccaggcaagatctacaacggacgagtggcaaacatagtgccgttt
gggtgtttcgtacaaattgagggtgtacgtaagagatgggagggattggtgcacatctca
caactgaggtccgagggcagggtcaccaacgtggctgaggtagtgtctagaggagataaa
gtcaaggtgaaggtgctgtcagtgacggggcagaaggtgtctctgaccatgaaggatgtc
tgtcaggacaccgggaaggatctgaaccctacatcacatgctcatctggaggcagagcgt
gaaggccgcaacccggaccggccgccgcccgccgccacggtgctggcggggctgcagggc
gggctcgaccccgacgaagactccagcaggaagagggtcaccagaatatccagtcctgaa
cggtgggagatcaaacagatgatttcatcgggcgtgatcgacaagagcgagctgccagac
tttgacgaggagacaggtctactgccgaaagacgaagacggagaagctgacatcgagatc
gaactggtggaggaagagcctcccttcctgcaaggccacggtagagctctccacgacctc
tctccagtgaggatagtaaagaaccctgacggttcgttagcccaagccgccatgatgcaa
tcagctctagccaaagagagaagagaacagaagatgatccaaagagaacaagaaatggaa
agtcttcccactggcttgaacaagaactggatcgatccgttacccgagacggatgggagg
gccttagcggcgaacatgagagggacgggtataactcctcaagatctgcctgagtggaag
aagcatgtcattggggggaagaagtcttcgtttggcaagaagactaacttgtcgctgttg
gagcagaggcagtcgctgccgatttataagctcagagatgagttgaccaaggcggtggca
gacaaccagatcctgatcgtgatcggcgagacagggtcggggaagacgacccagatcacg
cagtacctggcggagtgcgggctcacggcccgcggcaagatcgcgtgcacgcagccgcgc
cgcgtggccgccatgtccgtggccaagagggtggccgaggagttcggctgccgcctcggc
caggaggtcgggtacaccatccgcttcgaggactgcaccagccccgagactgttatcaag
tacatgacagacggcatgttgctccgggagtgtctaatggacctggacctgaagtcctac
tcagtaataatgttagacgaggcccacgaacgcaccatacacacagacgtcctcttcggc
ctcctcaaacaggccgtgcaaaagcgtccagaactaaagttaatagtgacctcggctact
ctagacgctgtcaaattctcccaatacttcttcgaagctccaatcttcactataccaggg
aggacgttccctgtggaagtgttgtacacgaaggaaccggagacggactacttggatgcc
tcgttgatcacctgcatgcagatacatttgcgagagccgcccggagatatcttgctgttc
ttgacaggccaagaggagatcgacacggcctgcgagatcctgtacgagcgcatgaagtcc
ctggggccagacgtgcccgagctgatcatcctgccggtgtactcggcgctgccctcggag
atgcagacgcgcatcttcgagcccgcgccgcctggctcgcgcaaggtcgtcatcgccacc
aacatcgccgagacctcgctcaccatcgacgggatatactacgtcgtggaccccggcttc
gtcaagcagaaggtgtacaactccaagacgggcatggactcgctcgtcgtcacgcctatc
agccaggcagcggcgaagcagcgtgcgggtcgcgcgggccgcactgggccgggcaagtgt
taccgcctgtacaccgagcgcgcgtaccgggacgaaatgttgcccacacccgtgcccgag
atacaacggacgaacttggccaccactgtgctacaactgaagacgatgggcatcaacgac
ttgctgcacttcgacttcatggacgcaccgcccgtggagtctctcatcatggcgctggag
cagctgcactcgctgtccgcgctcgactccgagggcctgctcaccaggctggggcgcagg
atggcggaattccctctggagccgaacttgtccaagatcctcatcatgtcggtggcccta
caatgctccgatgagatcctcactatcgtctccatgctcagcgttcagaacgtgttctac
cgccccaaggacaagcaagcactcgccgaccagaagaaggcaaagttcaaccaaccagaa
ggagatcacttaactctcctagcggtgtacaacagctggagaaacaacaagttttcgaac
gcatggtgctatgagaatttcgtgcagataaggacgctgaaacgcgcgcaggatgtcagg
aaacagctgcttgggattatggataggcacaaactggacgtagtatcggcgggtaagaac
acagttcggatccagaagaccatatgttccggcttcttccggaacgcagccaagaaggac
ccgcaggaggggtaccggacattggtcgacagccaggtcgtctacatacatccttctagc
gcgctgtttaataggcagcctgagtgggtgatctaccacgagctagtgcagacgactaag
gagtacatgcgcgaggtgaccaccatcgaccccaagtggctggtggagttcgcgccagcc
ttcttcaagttcagcgaccccaccaaactgtccaagttcaagaagaaccaacgcctcgaa
ccactctacaacaaatacgaggaaccaaacgcctggaggatctctcgagtccgccgaaga
aggaattaa
DBGET
integrated database retrieval system
