Pectinophora gossypiella (pink bollworm): 126370231
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Entry
126370231 CDS
T09293
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126370231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126370231
Enzymes [BR:
pgw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126370231
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126370231
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126370231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
LRR_9
Motif
Other DBs
NCBI-GeneID:
126370231
NCBI-ProteinID:
XP_049870996
EnsemblRapid:
LOC126370231
LinkDB
All DBs
Position
10:complement(3624535..3786274)
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AA seq
560 aa
AA seq
DB search
MSRNKDKHEGASGRTYHIMSEAERASGRRGGWTTLEVTGGVRALAPPLFQLTHLTALYLN
DNSLQRIPPDINQLVNLHTLDVSNNKLRSLPAELGDLIQLRELHLHNNYLRVLPYELGKL
FHLQMMGLQGNPLSKEMLSIYNDNNGTAKLLTYMLDNLQGTYLLQKLGRGAHANLVTATL
PPQRPWIPLTRPNRTRPTCIFTVMCYNVLCDKYATRQMYGYCPSWALEWDYRKKGILDEI
RHYSADIISLQEVETDQFYNFFLPELKQDGYDGIFSPKSRAKTMSESERKYVDGCAIFFR
SAKFALVKEHLIEFNQLAMANSEGSDNMLNRVMPKDNIGLAALLKTKEAAWENDFSGIPT
DSSMLGQPILVCTAHIHWDPEFCDVKLIQTMMLSNELRSILDDSARTLRLAGQRDNVQLL
LCGDFNSLPDSGVVEFLSAGRVSSEHRDFKELGYAASLRRMPGSEHEFTHNFKLASAYSE
DIMPYTNYTYDFKGIIDYIFYSKQTMTPLGLLGPLSQDWFREHKVVGCPHPHIPSDHFPL
LVELEMSPQTSNSNGLIGRR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaacaaagacaagcatgagggcgcgagtgggcgcacataccacattatgtcg
gaggcggaacgcgcctccggtcgccgcggtggttggaccacgcttgaggtaacaggaggt
gtgcgcgctctggcgcccccactctttcaactgacgcacctgacagcgttgtacctcaat
gacaactctctgcagcgaatcccgccggacatcaaccagctggtcaaccttcataccctg
gacgtgtctaataacaagctacgctcgctgccagctgaactcggggaccttatacaactt
agggaattgcacctccacaataactacctgcgagtcttgccgtacgagctgggcaagctg
ttccacctccagatgatggggctccaaggaaaccccctcagtaaggagatgctctccatc
tacaacgacaacaacggcacggccaagctgcttacctacatgctcgacaacttgcaaggt
acgtaccttcttcagaagttggggagaggcgcacacgcgaatttggttactgccaccctg
cccccgcagaggccttggatcccacttacccgaccaaataggacgcggccgacatgtatt
ttcacagtgatgtgttacaacgttctgtgcgacaagtacgcaacgcgacagatgtacgga
tactgcccgagctgggcattggaatgggactacaggaagaagggcattcttgacgagatc
agacattattcagccgatatcatcagtctacaggaggtggaaacggaccagttctacaac
ttcttcttgccggagctaaagcaggacgggtatgatggcatcttctcacctaaatcgcgt
gcgaagaccatgtcagagtctgagaggaagtacgtagacgggtgcgctatcttcttcaga
tctgccaagtttgcgttagtaaaagagcacctgatagagttcaaccaactagcgatggcg
aacagtgaggggtcggacaacatgctcaacagagtcatgcccaaggacaacatcgggcta
gccgccttgttgaagaccaaggaagctgcctgggagaatgatttctcaggtataccaacg
gactcgagcatgctagggcagcccatcctagtatgcactgctcatattcattgggacccg
gagttttgcgacgtgaagttgattcagacgatgatgttgagcaacgaactgcgaagtata
ctggatgactcggcgcggacgttgcgcctggcggggcagagggataacgtgcagttgctg
ctttgtggggacttcaactcgctgcctgatagtggtgtagtggagttcctgtcggcgggc
cgcgtgtcatccgagcacagagacttcaaggagctgggctacgcggcgtcactgcgccgc
atgccgggctccgagcacgagttcacgcacaacttcaaactggcgtccgcatacagcgag
gatatcatgccttacaccaactacacgtacgacttcaaggggataatcgactacatattc
tacagcaagcagacgatgacgccgctcggattgctcgggccgctgtcgcaggattggttc
cgcgaacacaaggtggtcggctgtccgcacccacacataccttcagatcacttccccctc
ctggtggagctggagatgtctccgcagacgagcaactcgaacggcctgatcgggcgcagg
tag
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