Pseudomonas glycinae: AWU82_19580
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Entry
AWU82_19580 CDS
T06994
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pgy
Pseudomonas glycinae
Pathway
pgy02020
Two-component system
pgy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AWU82_19580
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AWU82_19580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgy03021
]
AWU82_19580
Transcription machinery [BR:
pgy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AWU82_19580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
RRP4_S1
DUF4741
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AMQ85423
LinkDB
All DBs
Position
4140863..4142356
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD
PMADNAEQKPNTEIQEPSYQEAAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLP
SSDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LDAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWLAEAKRLV
TDYIDLLGSRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNAQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggatctgcaacaggaaatccaggaggcg
ctggaatccaatccgatgctcgaacgccaggaagacggcgacgacttcgacaactccgat
cccatggccgacaacgccgaacagaagcccaacaccgagatccaggaaccttcctatcag
gaggccgcgccgacagtcgacaacctcgaagacggcgaatggaacgagcgaatccccaac
gaactgccggtagacaccgcctgggaagacgtctaccagaccagcgccagcagcctgccg
agcagcgacgatgacgagtgggacttcaccacccgcacctccgccggcgagagcctgcaa
agccatctgctgtggcagctgaacctggcaccgatgtccgacaccgatcgcctgatcgct
gtgaccctgatcgattgcatcaacaatcagggctacctggacgaaaccctcgaagaaatc
ctcgacgcctttgatcctgagctcgacatcgagctggacgagatcgaagccgtcctgcac
cgcatccagcaattcgaaccggccggcatcggtgcacgcaacctgggcgaatgcctgctg
ctgcaattgcgccagctgtcggccaagaccccctggctggcagaggccaagcgtctggtc
accgattacatcgacctgctcggcagccgcgactacagccagctgatgcgccgcatgaaa
ctcaaggaagacgaactgcgccaggtcatcgaactggtgcagagcctcaacccgcgcccc
ggttcgcagatcgagtccaccgaagccgaatacgtggtacctgacgtcatcgtgcgcaag
gacaacgagcgctggctggtcgaactgaaccaggagtcggtgccgcgcctgcgggtcaat
gcccagtacgccggtttcgtgcggcgcgccgataccagtgccgacaacaccttcatgcgc
aatcagttgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaaccctg
atgaaagtggccacccagatcgtcgaacatcagcgcggctttctggagtacggcgacgaa
gcgatgaagccgctggtcctgcatgacatcgctgaagcggtgggcatgcacgagtcgacg
atttcccgcgtgaccacgcaaaagttcatgcataccccgcgaggcatatatgaactgaaa
tactttttctccagccatgtgagcacctcagaaggcggtgaatgctcgtccacggcgatc
cgcgcgatcatcaagaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtggctcgccgcaccgtcgccaag
taccgcgaatccctcgggatcgcgccttcgagcgaacgcaagcggttgatgtaa
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