Panicum hallii (Hall's panicgrass): 112874814
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Entry
112874814 CDS
T07366
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112874814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phai03041
]
112874814
Spliceosome [BR:
phai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112874814
Complex C
U5 SnRNP specific factors
112874814
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
TPR_16
TPR_2
Suf
PMC2NT
Motif
Other DBs
NCBI-GeneID:
112874814
NCBI-ProteinID:
XP_025794145
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All DBs
Position
9:12832731..12836941
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AA seq
959 aa
AA seq
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MSGPTPTPTPTPTPTPLPPPPAARPARYDFLNSKPPPNYVAGLGRGATGFTTRSDIGPAR
AAPDLPDRSASAAAAPAVGRGRGKPPGEDDGDDDGGDEEKGYDENQKFDEFEGNDAGLFS
NADYDDDDREADAVWESIDQRMDSRRKDRREARLKQEIEKYRASNPKITEQFADLKRKLA
DLSAQEWESIPEIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAGGTE
TPWAQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEIS
DIKKARLLLKSVTQTNPKHPPGWIAAARLEEIAGKLQAARQLIQRGCEECPKNEDVWLEA
CRLASPDEAKAVIARGVMSIPNSVKLWLQAAKLETSDLNKSRVLRKGLEHIPDSVRLWKA
VVELANEEDARLLLHRAVECCPLHVELWLALARLETYDQARKVLNKAREKLPKEPAIWIT
AAKLEEANGNTQSVSKVIERGIRSLQREGMDIDREAWLKEAEAAERAGSVLTCQAIVKNT
IGIGVDDEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHGT
RESLDALLKKAVNYNPRAEVLWLMAAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAF
KLEFENNEPERARMLLAKARERGGTERVWMKSAIVERELGNVTEERRLLEEGLKLFPSFF
KLWLMLGQMEDRLGRGAKAKEVYENGLKHCPSCIPLWLSLASLEEKISGLSKSRAVLTMA
RKKNPATPELWLAAIRAELRHANKKEADALLAKALQECPTSGILWAASIEMASRPQRKGK
SSDAIKRCDHDPHVIATVSKLFWLDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHG
NADTQKDVLKRCVAAEPKHGEKWQAISKAVENSHQPVEALLKKAVVALDADEILNAAGA
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccccaccccgactccgactccgaccccgaccccgaccccgctcccgccgccg
ccggccgctcggcccgcgcggtacgacttcctcaactccaagccgccccccaactacgtc
gcgggtctcggccgtggcgccaccgggttcaccactcgctcggatatcgggccggcccgc
gcggcgcccgacctccccgaccgctccgcctccgctgccgcggccccagccgtcggccgc
ggccgcgggaagccgccaggcgaggacgacggcgacgatgacggcggcgacgaggagaag
gggtatgacgagaaccagaagttcgacgagttcgagggcaacgacgccgggctcttctcc
aacgccgactacgacgacgacgaccgcgaggcggatgcagtgtgggagagcatcgaccag
aggatggactcgcgccgcaaggaccgccgcgaggcgcggctgaagcaggagattgagaag
taccgcgcgtcgaaccccaagatcaccgagcagtttgctgatctgaagaggaagctggcc
gatctgtctgcgcaggagtgggagagcataccggagattggggactattcgctgcgcaac
aagaagaagcggttcgagagttttgtaccagtgccggacacccttcttgagaaggcccgg
caggagcaggagcatgtcacggcgcttgatcccaaaagccgtgcagctggtggcacagag
acgccgtgggcgcagactcctgttaccgatcttacagctgtgggcgagggtcgtggcact
gtgctttcgctgaagttggataggctgtcggattcagtttctgggctcactgttgttgat
ccgaaggggtacttgacagacctgaaaagcatgaagattactagtgatgcggagatttct
gacatcaagaaggcacgactcctgctgaagtcagtgactcagacgaaccctaagcaccca
cctggttggattgctgctgctaggcttgaagagattgcaggcaagcttcaggctgcgcgg
cagctcatccagcgtggctgtgaggagtgtcccaaaaacgaagatgtttggcttgaggca
tgccgtttggctagtccagatgaggcaaaggctgtcattgccaggggtgttatgtcaatt
ccaaattctgtgaagctgtggttgcaggctgcaaaattagagaccagtgatctgaataag
agcagggtgttgaggaaaggattggagcacattcctgattctgtgcggttgtggaaggct
gtagttgagcttgcgaatgaggaggatgcaaggttgcttcttcacagggctgtggagtgt
tgcccgctgcatgttgagctgtggcttgcccttgcgaggctggagacgtatgaccaagca
aggaaggtacttaacaaggcaagggagaagctgcccaaggagcctgccatttggattact
gctgcgaagctggaggaggctaatgggaacacacaatcagttagcaaggtgattgagaga
ggtatcagatctctacaaagagaaggaatggatatcgatagggaggcatggcttaaagaa
gcagaagctgcagagcgtgctggatctgttttgacttgccaggctattgtgaagaacaca
attggcattggtgttgatgatgaggatcggaagcgtacttgggttgctgatgctgaggaa
tgcaagaagcgtggttcaattgaaacagcgcgtgccatctatgctcatgcgctcactgtt
ttccttactaagaagagtatttggctgaaagcagctcagcttgagaagagccatgggact
agggagtcacttgatgcgctcctcaagaaggctgtgaactacaatccacgagctgaagtg
ttatggcttatggctgcaaaggagaaatggttggctggggatgtgcctgctgctcgagcc
attcttcaagaagcttatgctgctattcctaactcagaagagatttggttggctgcattc
aagcttgagtttgagaacaacgaaccagagagagcaagaatgctattggctaaggctagg
gaaagaggaggcactgagagggtttggatgaaatctgccattgttgaaagggagctaggg
aatgtgactgaggaaaggaggttgttagaggaaggtctgaagctattcccctcattcttc
aaattgtggttaatgcttggacagatggaagaccgccttggtcgtggagcaaaggccaag
gaggtttatgagaatggcctgaagcactgccctagttgcatccctctttggctctctcta
gccagcttagaggagaagattagtggcttgagcaaatcccgtgctgttctcacaatggca
agaaagaagaacccagctacacctgaactctggcttgcagcaattcgagctgaacttagg
catgcgaacaaaaaggaagccgatgctctgctggctaaggcattacaagagtgcccaaca
agtggtattctgtgggctgcctctattgagatggcgtcacggccccaacgtaaagggaag
agttcagatgctatcaagcgttgtgatcatgatccgcatgtcattgcaactgtatccaaa
ctcttctggcttgacaggaaggttgataaagctaggacttggttgaacagggctgttact
cttgctcctgatattggggatttttgggcattgtactataaatttgaacttcagcatgga
aatgcagacacccaaaaggatgtcctgaaaagatgtgttgcagcagaaccaaaacatggt
gaaaaatggcaagcgataagcaaggctgttgagaactcacaccagccagttgaggctctt
ctgaagaaagctgtcgtagctcttgatgcagatgaaattctcaatgctgcaggcgcctag
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