Panicum hallii (Hall's panicgrass): 112892342
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Entry
112892342 CDS
T07366
Name
(RefSeq) transcription initiation factor TFIID subunit 12b
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112892342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112892342
03036 Chromosome and associated proteins [BR:
phai03036
]
112892342
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112892342
Coactivators
SAGA/TFTC/STAGA complex
112892342
Chromosome and associated proteins [BR:
phai03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
112892342
STAGA complex
112892342
TFTC complex
112892342
SAGA complex
112892342
SLIK complex
112892342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
112892342
NCBI-ProteinID:
XP_025815307
LinkDB
All DBs
Position
5:5657668..5662132
Genome browser
AA seq
559 aa
AA seq
DB search
MADPPPVAASASPAQPDQLSAGASVSTPQNPNPNPILSPQIPPSPTVSDLSAHISSPQQL
DAAAAAAAAASGGGGSMDYPPRPPQLQAPSPTQGGPGSGGFGQIHRSGSTSRISTASQLP
QYAAMAARMYGAQMSFSGGGGLVGQQQQQQLAGRSPMIGQGQLGMLQGQGNAASAAHFGI
QSQMMAQARQKGMVQGTQLNNANTAQALQGMQPMGVMGTMGMNQMRPNGTIPYGAQQRFA
HAQMRPQASQQAALSPQKVAGQGLSRTASITALNSQLPGSSQNGQMVAMSMPQQQQQQQQ
QWLKQMQSSMGSPVSPQFQHQQRLMLMQQLQQKTGLSQQQLAQVQQQHPHLSAQQLIQQQ
HFLQQFQQQQPLQSPRVSASGSQKSANLTGSQPGTPLSGGTMTGGSASQGAEGTSQLLGK
RKIQDLVAQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACSLAKHRKSSVVEAKDVLLHL
EQNWHLSVPGFSREDKNPQRNSVKPSVDPQQPESDATGIRGPGNKLMANNSVVNHQIRPP
IAEPSAMPTVGPLSKAPRF
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccgccgcccgtggccgcctccgcgtcgccggcgcagcccgaccagctctcc
gcgggggcctccgtatccaccccgcagaaccccaaccctaaccccatcctctccccgcaa
atccccccgtccccgaccgtctccgacctctccgcgcacatctcctccccgcagcagctc
gacgcggcggccgccgccgccgccgccgcgtcgggcggcgggggatccatggactaccca
ccgcggccgccgcagctgcaggcgccctcgcccacgcagggggggcccggctcggggggg
ttcggccagatccaccgctcggggtccacctcccgcatctccaccgccagccagctcccg
cagtacgccgccatggcggctaggatgtacggcgctcagatgagcttctcgggcggcggc
gggctggtgggccagcagcaacagcagcagctggcggggcgttcgcccatgattgggcag
ggccagctggggatgctgcaaggccagggaaacgcggcatccgcggcacattttgggatt
cagtcgcagatgatggcgcaggcaaggcaaaagggcatggtacaaggtactcaattgaat
aatgctaatacagctcaagcactgcaaggaatgcagcccatgggagtcatgggtactatg
gggatgaatcagatgagaccgaatggaactatcccctacggtgctcaacaacggtttgcc
catgcacaaatgagacctcaagcatctcaacaagctgcactatctccgcagaaagtagcc
ggtcaaggcttgtcgagaacagcgtcaattacagcattaaattcacaactgcctggatca
tcgcaaaatggccagatggtggcaatgtctatgcctcagcaacaacaacagcaacagcag
cagtggttgaagcaaatgcaatcatccatgggctcaccagtttctccacaatttcagcac
caacagagactcatgttaatgcagcaacttcagcagaaaacgggattgagccaacagcaa
cttgcacaagtccaacaacagcatccgcatctcagtgcccaacaactgattcagcagcaa
cattttctccagcagtttcagcagcagcagccactacaatctccaagggtttcagcatct
ggttcgcagaagtctgcgaaccttacaggatcacagccgggtacacctttgtccggtgga
actatgactggtggaagtgcaagtcagggagctgaaggaactagccaacttcttgggaaa
aggaagatacaagatctggttgcacaggtagatcccctaggcaaggttgaccctgaggtg
gaagatttacttttagaaattgctgatgacttcattgactcggtgactgcatttgcgtgc
tccttggcaaagcataggaaatcatccgttgtggaagcgaaggatgtgttgctgcactta
gaacaaaattggcatttgtctgttcctggattctcaagagaggataagaatcctcaaaga
aactctgtaaagccatcggtagatccgcaacagccagaaagtgatgctaccggtattaga
ggcccaggcaataaacttatggctaataactcggttgtcaaccatcaaataagacctcca
attgcagagccttcagcaatgccaacagtggggcccctatcgaaagcaccccgcttctaa
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