Panicum hallii (Hall's panicgrass): 112900183
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Entry
112900183 CDS
T07366
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03022
Basal transcription factors
phai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112900183
09124 Replication and repair
03420 Nucleotide excision repair
112900183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phai03021
]
112900183
03400 DNA repair and recombination proteins [BR:
phai03400
]
112900183
Transcription machinery [BR:
phai03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
112900183
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
112900183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
112900183
NCBI-ProteinID:
XP_025824746
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All DBs
Position
7:47308730..47317837
Genome browser
AA seq
451 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYAAKHRVAIDKLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL
PREPIPLSVTGRLPASADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEAPKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVQRIAIRDLAELGLVKLQQGRKDSWFIPTQLATNLSASLSDSSSSKEGFVV
VETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESIYGAFENGITAEQIISFL
KQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFDQCCDHARDH
GYLLWEDPRRMRLIVRGEFHPEMREFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtggcgcggaacttcatggatatggtggctgctctgcctgcc
tccaagcttgatatgctctatgactcggccttcatctgtgaggctgtactcaggtcactc
ccaccactggcaaagaaatatgcactgcagatgttgtacgtgttggcaccggtgaccgct
gcagctatggaagagtgggtgctcaatgaatatgctgccaagcatagggttgccattgat
aagctgctccaactcagggtctttgttgaagtgcgcgatagacgaaaggaggtgagctac
aagatgaatcaaaagttccagggtaacatgcagaagtatttggttgatggtggaagttta
ccaagggaaccgataccattaagtgttactggtagattgcctgcatcagcagatctggaa
gcctatgctcttgatcagtgggagtgcttcttgttgcaattgatcaattcatctcaagtt
gaaaaagggacaagtttcagctcctccatgatgaagacatttcagcgtggccttctgagt
tcaagggatggtgaagctccaaagttgactgagaatggcttccaatttcttctgatggaa
acaaatgcacaactttggtacataatgagagaatacatttcctctgcagaggaacgtgga
gtggaccctacggagctgatatcatttctcctggaacttagttttcataaattgggagcg
gcttatagtttgaacactctgactgatgtccaaagaattgccatcagggatcttgcagag
ttgggattagtcaaactgcagcagggtcgaaaggatagctggttcattcctacccaattg
gctacaaatctctcagcaagcttgtcagattcatcatctagcaaagagggctttgtggtt
gtggagacaaactttagaatgtatgcatactctacttccaaattgcactgtgagattctg
cgccttttctcaagggtggagtatcaacttcccaacctcattgtgggagctattacaaaa
gaaagtatttatggtgctttcgagaatggaataactgctgaacagataatttcatttctc
aagcaaaatgctcaccctcgtgttgccgacaagatacctactgtcccggagaatgtcaca
gatcagattaggctgtgggaaactgatcgtaacagggttgagatgattccatcacattta
tatgaagattttcctagcaaggaatggtttgatcaatgctgtgatcatgcaagggatcat
ggatacttgctctgggaggacccgaggaggatgaggctgattgtacgaggggagttccac
cctgaaatgagggagttcctccgcaggcaaagatga
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