Pseudonocardia sp. HH130630-07: AFB00_28215
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Entry
AFB00_28215 CDS
T04486
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
phh
Pseudonocardia sp. HH130630-07
Pathway
phh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AFB00_28215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phh03400
]
AFB00_28215
DNA repair and recombination proteins [BR:
phh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AFB00_28215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH_5
GIY-YIG
UVR
HHH_2
HHH
Motif
Other DBs
NCBI-ProteinID:
ANY09483
UniProt:
A0A1B1ZUP5
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Position
complement(5962368..5964371)
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AA seq
667 aa
AA seq
DB search
MADPSTYRPATGTIPESPGVYRFSDPRGRVIYVGKAKSLRQRLNSYFADLAGLHPRTRQM
VTTASKVEWTVVGTEVEALQLEYNWIKEYDPRFNVRYRDDKTYPVLAVTMHEEYPRLHVY
RGPRRKGVRYFGPYAHAWAIRETLDLLLRVFPARTCSTGVFKRHGQIGRPCLLGYIDKCS
APCVGTVTADEHRDIVESFSDFLSGRTDRMVKHLEREMAQASENLEFERAARMRDDLGAL
RRAMEKQAVVLGDGTDADVVAFAEDELEAAVQIFHVRGGRVRGQRGWVIDKVEPTDTEQL
VERFVSQFYGEQHALAGSADDAMQPVPKEILVPVPPADAPALERWLTGLRGSKVSLRVAQ
RGDKKALAETVARNAKEAFAQHKLRRAGDLTARSAALQEIQENLELDQAPLRIECIDISH
VQGTNVVASLVVFEDGLPRKSEYRRFEIRAAAQEGDVASIAEVVRRRFRRYLAETADEPD
PGGPSGEVGPGDTVRTGIDPETGRPKRFAYPPNLLVVDGAKPQVDAAAAELAELGITDVA
VCGLAKRLEEVWLPDDTDPVILSRTSEGLYLLQRVRDEAHRFAITYHRQRRSQGMTASVL
DGVPGLGPARRQALLKHFGSVRKLRAADVDEIAGIPGFGRQTAESVVAALHGGDDAQGDG
DDGDGDR
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggccgacccgagcacctaccgtccggcgaccgggacgatcccggagtcgccgggggtc
taccggttctccgacccgcgtggccgggtgatctacgtcggcaaggccaagagcctgcgg
cagcggctcaactcctacttcgccgatctcgccggtctgcacccgcgcacccggcagatg
gtgaccacggcgtcgaaggtcgagtggaccgtcgtcggcaccgaggtcgaggcactccag
ctggagtacaactggatcaaggagtacgacccgcggttcaacgtccgctaccgcgacgac
aagacctatccggtgctcgcggtgacgatgcacgaggagtacccgcggctgcacgtgtac
cgcggtccgcggcgcaagggcgtgcgctacttcgggccgtacgcgcacgcctgggccatc
cgggagaccctcgacctgctgctgcgggtgttcccggcgcgcacctgctcgaccggggtg
ttcaagcggcacggtcagatcgggcggccctgcctgctcggctacatcgacaagtgctcg
gcgccgtgcgtcggcacggtcaccgccgacgagcaccgcgacatcgtcgagagcttctcc
gacttcctgtccgggcgcaccgaccgcatggtgaagcacctggagcgggagatggcccag
gcctcggagaacctcgagttcgagcgcgccgcccggatgcgcgacgatctgggcgcgctg
cgccgggcgatggagaagcaggccgtcgtgctgggcgacgggaccgacgccgacgtcgtc
gcgttcgccgaggacgagctggaggcggcggtccagatcttccacgtgcgtggcgggcgg
gtccgcggccagcgcggctgggtgatcgacaaggtcgagccgaccgacaccgagcagctc
gtcgaacggttcgtctcgcagttctacggcgagcagcacgcgctggcgggctccgcggac
gacgcgatgcagccggtgccgaaggagatcctcgtcccggtgccgccggccgacgccccg
gcgctggagcgctggctgaccggcctgcgcggctcgaaggtctcgctgcgggtcgcccag
cgcggcgacaagaaggcgctggccgagacggtcgcgcgcaacgccaaggaggcgttcgcc
cagcacaagctgcgccgggccggtgacctcacggcgcgctccgcggccctgcaggagatc
caggagaacctggagctggaccaggcgccgctgcggatcgagtgcatcgacatcagccac
gtgcagggcacgaacgtggtcgcctcgctggtggtgttcgaggacggcctgccccgcaag
tccgagtaccgccgcttcgagatccgggccgcggcccaggagggcgacgtcgcctcgatc
gccgaggtcgtccgccgccggttccgccgctacctggccgagaccgccgacgagccggac
cccggtggcccgtccggcgaggtcgggccgggcgacaccgtccggaccggcatcgacccg
gagacgggccgcccgaagcggttcgcctatccgccgaacctgctcgtcgtcgacggcgcg
aagccccaggtcgacgccgcggccgcggagctggccgagctggggatcaccgacgtcgcg
gtctgcggcctggccaagcgcctggaggaggtgtggctgcccgacgacaccgacccggtc
atcctctcccggacgagtgaaggtctgtacctcctccagcgggttcgggacgaggcgcac
cgtttcgccatcacctatcaccggcagcgtcgttcgcagggcatgaccgcctccgtgctg
gacggcgtacccggtctcggcccggcccgcaggcaggcgctgctgaagcacttcggctcg
gtgcgcaagctgcgtgccgccgacgtcgacgagatcgcggggataccgggattcgggcgg
cagaccgccgagtcggtggtcgccgcgctgcacggtggggacgacgcccagggggacggc
gatgacggggacggagaccggtga
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