Pseudopodoces humilis (Tibetan ground-tit): 102101413
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Entry
102101413 CDS
T02921
Symbol
TNRC6B
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phi03019
]
102101413 (TNRC6B)
03036 Chromosome and associated proteins [BR:
phi03036
]
102101413 (TNRC6B)
Messenger RNA biogenesis [BR:
phi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102101413 (TNRC6B)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102101413 (TNRC6B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
102101413
NCBI-ProteinID:
XP_014112074
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MSGFCFCTECSQDGSLRALAALGNCQRQYFAFLQSFAQILFPCKLMREKYWRKAVPREKE
QEREEQLMEDKKRKKEDKKKKDSAQKVTDQKTKVPEVTKPSLSQPVAASPIGNSPSPPVN
GGNNAKRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPP
SPAAPGANPNNAQPVTGALLQSDSGTATDSAIGGAAASNYANSTWGPGASSNSGTNANPT
HIWDKVIVDGSDMEEWPCIASKDAESSSENTTDNNSASNPGLEKNALPGSTTSNKGKGSQ
CQSGSAGNECNLGAWKSDPKAKSVQSSNPAAESNNGLGNWRNLSGQDRISPGSGFSNFNP
NSNPSAWPALVQEGNSRKGTLESDSGSSNAQISTVGQTSREQQSKMENAGVNFVSGREQA
QIHNTDGPKNGNTNSLNLSSPNPMENKGMPFEMGLGNSSRSTDTPSQSTGERKTGSVGSW
GTARGSSGTDTVSGQSNSGNHGNNGKEREDSWKGANVQKPNGSRSDSWDNNNRSTGGGSW
NFGPQHTNESKWGEGNKLTSGVSQGEWKQLSGSDELKIGEWSGPNQPNSSTGAWDNQKGH
PLPENQGNSQAPCWGRSSSSAGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVL
QTLLSRTDLDPRVLSNTGWGQTQIKQDTVWDIEEMPRPEGKSDKGTEGWESSATQTKNSG
GWGDVPSQSNQNKSGWGELSTPTEWKDPKNTGGWNDYKNSNSSNWGGGRQEEKSSSSWND
SSSKDQGWGGRQTNQGWSSGKNGWGEEADQTKNSNWESAGNKPVSGWGEGGQNEIGTWGN
GANTSSASKGGWDDCKRTSTWNETGRQPNSWNKQQQHQHQQQQQESSGSWGPPPQTPSNG
RPPNSNWNSGPQPAAPKEEEPSGWEEPSPQSISRKMDIDDGTSAWGDPSSYNYKNVNLWD
KNSQGGQAPREQSLPTPMTSKSQASVWSKSTPPAPDNGTSAWGEPNETSPGWGEVDDTGA
STTGWGNAPSNTPNAMKSSEYRPGSKSMQDGWGESDGPVTGTRHSSWEEEEEGGVWNTAG
SQGSSSSHNSTSWGQGGKKTQMKCALKGGNSDSWMNPLSKQFSNMGLLSQTDDIPGSKMD
LSVGGLPDKKFEVDKRAMNLGDFNDMMRKDRSGFRPPNSKDMGTTDSGPYFEKLTLPFSN
QDGCLGDEAPCSPFSPSPSYKLSPSGSTLSNVGLGAIGSGLSPQNFAARQGGNHGLFGNS
TAQSRGMHTPVQPLNPSPNIRAQVPPQFLSPQVSASMLKQFPNSGLNPGLFNMGPQLSPQ
QIAMLSQLPQIPQFQLACQLLLQQQQQQQLLQSQRKLSQAVRQQQEQQIARMVSALQQQQ
QRQPGMKHSPSHPVGPKPHLDSMVPNPLNVGLSDLQTKGQIPGYGSGGFGSSGMDYGMVG
GKEAGTESRFKQWTMMEGLPSVASQDANMHKNGAIVPPGKARGGSPYNQFDIIQGDPLSS
HAGPAGDSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLG
GTATSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFSDYKS
TWSPDPIGHNPTHLSNKMWKNHISSRNTTGLPRPPPGLTNPKPSSPWNSTAPRSVRGWGA
QDSRLGSASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTAL
IRYNTKQEAAKAQTALHMCVLGNTTILAEFATDEEVSRFLAQAQPPTPTATPSAPAAGWQ
SLETGQNQTDPVGPALNLFGGSTGLGQWSSGGGGSSGGDLTGASLWGPPNYSSSLWGVPS
VEDPHRMGSPAPLLPGDLLGGGSDSI
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggttttgtttttgcactgaatgtagccaggacggatccttgagggctttggca
gcccttggaaactgtcaaaggcagtattttgcatttctgcagagctttgcacagatcctg
ttcccatgcaaactgatgagggagaaatactggaggaaggcagtcccaagagagaaggag
caagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataagaaaaag
aaggactctgctcagaaggtcacagatcaaaaaaccaaagtgcccgaagtgacgaaacca
agtttaagccaaccagtggctgccagcccaattggcaactctccatcgccaccagtcaat
ggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcccgc
tacatgcctcgggaggtgccgccgcgattccgttgccagcaggaccacaaagtgttactg
aaacgtgggcagccccctccaccatcctgcatgctccttgggggtggagcagggcctccc
tccccagcagcaccaggagcaaacccaaacaacgcacaaccagtgacaggagcactgctg
cagagcgacagtgggactgcaacagattcagcaattggaggtgctgctgcttcaaattat
gcaaattctacttggggtcctggagcctcctccaacagcggcaccaacgccaacccaact
cacatctgggacaaggtgattgtagacgggtctgacatggaagagtggccttgtattgcc
agcaaagatgctgagtcttcttccgaaaacaccaccgataacaacagtgcctcaaaccct
ggcttggagaagaacgctctgccaggaagcaccactagtaacaaaggaaaaggaagccag
tgccagtctggaagcgctggaaacgaatgtaatcttggggcctggaaatctgatcccaag
gctaaatctgttcaatcttccaaccctgctgccgagagtaacaatggactaggtaattgg
aggaacttgagtggacaagacagaatcagtcccggttctggcttcagcaactttaaccca
aatagcaacccatctgcttggccagcactggttcaagagggcaattctaggaaaggaact
ctggaatctgatagtggtagctccaatgcacagattagcacagtaggtcagacctctagg
gaacagcagtcaaagatggaaaatgcgggtgttaactttgtctctggcagagaacaggct
caaattcataacactgatggaccaaaaaatggaaacactaactccttgaacttaagttca
ccaaaccctatggagaataagggaatgccctttgaaatgggcttggggaactcttccagg
agcactgacaccccttctcaaagcactggagaaagaaagacagggagtgttggatcttgg
ggtacagctagggggtcttctggaactgacacagtctctgggcagagcaattctggaaac
catgggaacaatggaaaggagagagaggactcctggaaaggagctaatgttcaaaaacct
aatgggtcaagaagtgattcttgggataacaataaccggtctacgggtggtgggtcttgg
aactttggccctcagcatacaaatgaaagcaaatggggtgaagggaacaaattaacatct
ggggtctctcagggagaatggaaacagctgtctgggtctgatgaactgaagattggagag
tggagtggtccaaaccaaccaaattctagcactggagcatgggacaatcaaaaaggccac
cctcttcctgaaaaccaaggtaattcccaggctccctgttggggaagatcttccagctct
gcgggaagtgaggttggaggtcaaagcactggaagcaaccacaaagcaggaagtagtgac
agtcacaattctggacgccgatcatacaggcctacgcatcctgattgccaggcagtcctg
cagactttgctgagcaggactgacttggacccccgagtgctttcaaacaccggctggggc
cagactcaaattaagcaagacaccgtgtgggatattgaagaaatgccacggcccgagggg
aagtctgataaaggaactgaggggtgggagagctctgccacacagacaaagaactcaggg
ggctggggcgatgtacccagccaaagcaatcaaaacaagtctggatggggtgagctctca
accccaacggagtggaaggaccccaaaaatactggaggatggaatgactataagaactcc
aactcttctaattggggaggaggaaggcaagaagaaaaatcatcttcctcttggaatgac
agctctagtaaggatcaggggtggggtggacggcaaactaatcaaggatggtcttctgga
aagaacggttggggagaggaagctgaccaaacaaaaaacagtaactgggaaagtgcagga
aacaagccagtgtctggttggggtgaaggtgggcaaaatgagattggaacttggggtaat
ggtgcaaatacaagctctgcttcaaagggtggatgggatgattgtaaaagaacttcaaca
tggaatgagacgggtcgacagcccaactcctggaacaagcagcagcagcaccagcaccag
cagcaacagcaggagtcttctggttcctggggtccaccgccccaaactccaagtaatggg
cggcctccaaactcaaactggaacagcggaccacagccagctgcccccaaagaggaggag
cctagtggctgggaagaaccttctccgcagtcaatcagtcgaaaaatggatattgatgat
ggcacttcggcatggggagatcctagcagttataactacaagaatgtgaatctgtgggac
aagaactcacaaggaggacaggccccacgggagcagagcctgcctactccaatgactagc
aaatcacaagcatcagtctggagcaaaagcactccacctgctccagataatggtacatcc
gcctggggtgagccaaacgaaaccagtcccgggtggggtgaagtagatgatacaggagca
tcaactacaggctgggggaatgcaccttccaacaccccgaatgccatgaaatctagtgag
tacagaccaggttctaaatctatgcaagatggctggggagagagtgatgggccagtgaca
ggaacacgtcattccagctgggaagaggaggaggagggaggagtctggaacacagcaggc
tctcagggaagcagttcctcccacaactcaacaagctgggggcaaggaggaaagaaaaca
caaatgaagtgtgcattaaaaggaggaaatagtgattcgtggatgaaccctttatccaaa
cagttttcaaatatgggcttgctaagtcaaactgacgacattccaggcagtaagatggac
ttgtctgtaggtggtctcccagataagaagtttgaggtagataaacgagccatgaatctc
ggggattttaatgacatgatgagaaaggatcgatctgggttccgtccacctaattccaaa
gacatgggaaccacagatagtgggccttattttgagaagctgactttgcctttctccaat
caagatgggtgccttggggatgaggctccctgctctcccttctccccttctcccagctac
aagctgtctccctctggttccacactatccaacgtcggccttggggcaatcggctcaggg
ctcagtccccaaaacttcgctgctagacaaggtggcaatcatggtttgtttggaaacagc
acagcacaatcgaggggcatgcacacaccagtgcagccactaaatccttcccccaatatc
cgggcgcaagtgcctccccaattcctttctccccaggtttcggcctccatgctcaaacag
tttcccaacagtggcttgaatcctggtcttttcaatatgggcccccagctttctccacaa
cagattgccatgctgagccaacttccacagattccccagtttcaattagcttgtcagctc
ctccttcagcagcagcagcagcaacagctgttacagagccagagaaagttatctcaagct
gtgcgacaacagcaggagcaacagattgctcgtatggtgagtgccctccagcagcagcag
cagaggcagcctggcatgaagcattcgccatcccaccctgttgggcctaagccacattta
gacagcatggtacccaatcctttgaatgtgggtctctcagatttacagaccaaagggcag
atacctggatacggttcaggtggctttggctcaagtggcatggattatggcatggtggga
gggaaagaggctggaacagaatcccgctttaagcagtggactatgatggaagggctgccc
tctgtggcttctcaagatgccaatatgcacaaaaatggtgcaatagtgccccctggaaag
gctcgcggaggatcgccctacaaccagtttgacataatccagggcgacccactcagcagc
catgcaggccctgctggtgatagttggttacctgccaaatctccaccaacaaacaagatc
ggaagtaaatccagcaatgccagctggcctccagagttccaaccaggagtgccatggaaa
ggtatacaaaacattgaccctgaatctgacccctatgtgacccctggaagtgtgctgggg
gggacagccacatctcccattgtagatactgaccaccaacttctgcgggacaacaccaca
gggtctaattcttccctcaacacctcgctgccttcacctggtgcctggccctacagtgcc
tctgacaattccttcaccaacgttcatagcacttcagcaaaattcagtgattacaaatca
acatggtccccagatcccataggacacaatcccactcatctctccaacaagatgtggaaa
aaccatatttcctcaaggaacactacagggctgccccgcccacctcctggcctgaccaac
cccaaaccatcatctccatggaacagcacagcaccccgatcggtcaggggctggggggca
caggactcaaggcttggctctgcatctacttggagtgatggtggctcagttcgtcctagc
tactggctggttcttcacaatctcactccacagattgatgggtcaaccttgaggacgatc
tgcatgcagcatggcccactgctgacattccatctgaacctgacccagggcaccgccctc
atccgatataacaccaaacaggaggcggccaaggcccagactgcactgcacatgtgtgtg
ttgggaaacactaccatcctggctgagtttgccacagatgaagaggttagtcgctttttg
gcacaagctcagccccctacacctacagcaaccccgagtgcacccgcagcaggctggcaa
tccctggagacgggacagaaccagacagatccagttggacctgctttgaatctctttggt
gggtcaacagggcttgggcagtggagcagtggtggcggcggcagcagtgggggtgatctc
actggcgcttcattgtgggggcccccaaactattcttcaagcttgtggggggtcccaagc
gtagaggatccacacagaatgggcagccctgctcccttactacctggagaccttctggga
ggagggtcggattcaatctga
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