Pseudopodoces humilis (Tibetan ground-tit): 102104738
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Entry
102104738 CDS
T02921
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi04510
Focal adhesion
phi04512
ECM-receptor interaction
phi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102104738 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102104738 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102104738 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
phi00536
]
102104738 (COL1A1)
Glycosaminoglycan binding proteins [BR:
phi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102104738 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
102104738
NCBI-ProteinID:
XP_014116476
LinkDB
All DBs
Position
Unknown
AA seq
1453 aa
AA seq
DB search
MFSFVDSRSLLLIAATVLLTRGQGEEDIQTGSCIQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPAYPESPGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGARG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NTGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGAAG
KDGETGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGNQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGETGDAGAKGDAGPPGPAGPTGAPG
PAGAVGALGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGAPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGSPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKNGDRGETGPQGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVFCNLETGETCVYPTQASIARKNWYLSKNPKEKKHVWFGESMS
DGFQFEYGGEGSDPADVAIQLTFLRLMATEASQNVTYHCKNSVAYMEQASGNLKKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGAWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDIGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggtcactgctgttgatagcagcgaccgtcctactcacc
cgcgggcaaggagaggaagacatccaaaccgggagctgcatccaggatgggctcacgtac
aacgacaaggacgtgtggaaaccagaaccgtgccagatctgcgtctgcgacagcggcaac
atcctgtgcgacgaggtgatctgcgaggacacctccgactgccccaacgccgagatcccc
ttcggagagtgctgccccatctgtcccgacaccgacgcctcccctgcctacccagagagt
cctggagtagagggtcctaaaggagacaccggccccaaaggagacaggggactccccggc
ccccctggcagagatggaattcctggacagcccggactcccgggaccccccggccccccc
ggccccccaggcctcggcggaaacttcgctccccaaatgtcctacggctacgacgagaag
gccggaggcatggccgtgcccgggcccatgggcccagctggtccccgtggtctccccggc
cctcccggtgctcccggtcctcaaggtttccaaggtccccctggagaacctggagagcct
ggtgcttctggtcccatgggtccccgaggtcccgctggcccccctggcaagaacggagat
gacggtgaagctggcaagcctggccgccccggagagcggggtccccccggcccccagggc
gctcgaggtctccccggcaccgccggcctgccgggcatgaagggacacagaggtttcagt
ggtctggatggtgccaagggtgagcctggacctgctggccccaagggagagcccggcagt
cccggagagaacggagctcctgggcagatgggtcctcgtggtcttcccggcgagagaggc
cgtcccggcccatctggcccagctggcgctcgcggcaatgacggtgctcccggtgctgcc
ggtccccccggtcccaccggtcccgctggtcctcccggcttccccggtgccgctggtgct
aagggtgagaccggtccccagggagctcgtggcagcgaaggtccccaaggtgctcgtggt
gagcccggtccccccggccctgctggcgctgccggtcctgctggcaaccccggtgctgac
ggccaacccggtgccaagggcgccaccggcgctcccggcattgctggcgctcccggcttc
cccggtgcccgcggtccctccggaccccagggccccagcggtgcccccggccccaagggt
aacaccggtgagcccggtgctccaggcaacaagggtgacaccggtgccaaaggcgaaccc
ggtcccgctggtgtccaaggcccccccggccccgctggggaggaaggcaagagaggagcc
cgtggtgagcccggccccgccggcctgcccggccccgctggcgaacgtggtgctcccggc
agccgcggtttccctggcgccgatggcatcgccggtcccaagggtccccccggcgagcgc
ggctcccccggccccgtcggccccaaaggatctcctggtgaagctggacgccccggggaa
cccggactccccggtgccaagggtctgactggaagccccgggagccccgggcccgacggc
aagaccggcccccctggtcccgctggtcaagacgggcgccccggcccccccgggcccccc
ggagcccgaggccaggccggcgtgatgggattccccggtcccaaaggtgctgcgggcgaa
cccggcaaacctggcgagagaggagctcccggtccccccggagccgtgggtgctgctggc
aaagacggtgaaaccggtgcccaaggtccccccggccccaccggtcccgctggagaaaga
ggtgaacaaggtcccgctggtgctcctgggttccagggtctgcccggccccgctggcccc
cccggcgaggctggcaagcccggtgagcagggtgtccccggagacgccggagcccccggt
cccgccggtgccaggggtgagagaggattccctggagaacgcggtgtccaaggtcccccc
ggtccccaaggtcctcgtggtgctaacggtgctcccggtaacgatggtgctaagggcgat
gctggtgctcccggagcccccgggaaccaagggccccccggtctgcagggtatgcccgga
gagcgtggtgctgccggcctgccaggcgccaagggtgacagaggtgaccccggtcccaaa
ggtgctgatggcgctcctggcaaggacggtctccggggcctgaccggtcccatcggcccc
cccggccccgctggtgctcctggtgacaagggtgaagccggtccccccggtcctgctggt
cccactggtgcccgtggtgctcccggtgaccgcggcgagcccggccctcccggtcctgct
ggatttgctggcccccccggcgctgacggccagcctggtgctaaaggtgaaactggggat
gctggagccaagggtgacgccggtccccccggccccgctggccccactggtgctcccgga
cctgctggcgctgttggtgctctcggtcccaaaggtgctcgcggaagcgctggaccccct
ggtgctactggtttccctggtgctgctggaagagttggaccccccggcccctcaggcaac
atcggcctccccggcccgcccggccccagcgggaaggaaggcggcaaaggaccccgcggt
gagaccggccccgctggccggcccggagagccgggacccgccggtccccccggtcccccc
ggagagaagggagcccccggcgctgacggccccatcggcgctcccggcacgcccggaccc
caaggtatcgccggccagcgcggtgtcgttggtctccccggccagagaggcgagagaggc
ttccctgggctgcccggcccctccggtgaacccggtaaacaaggtccctccggctccccc
ggcgagcgcggcccccccggccccatgggcccccccggcctggcaggaccccccggagaa
gccggacgcgagggctctcccggtgctgaaggtgcccccggccgtgacggtgctgctggt
cccaagggcgatcgtggtgagaccggccccgccggccctcccggtgctcccggtgccccc
ggtgcccccggccccgtcggtcctgctggcaagaacggagatcgtggtgagaccggtccc
caaggtcccgctggcccccctggtcctgctggtgctcgtggtcctgctggtccacaaggt
ccccgtggtgacaaaggtgaaaccggcgaacagggtgacagaggcatgaagggtcacaga
ggcttctccggtctccagggcccacctggtcctcccggctctcctggtgaacaaggtcct
tctggtgcttctggtcccgccggtccccgaggtcctcccggctccgccggtgctgctggc
aaggacggtctgaacgggctgcccggccccatcggcccccccggcccccgcggccgcacc
ggagacgtcggtcccgttggtccccccggcccccccgggccccccggtcctcccggccct
cccagcggcggattcgacttcagcttcctgccccagccgccccaggagaaggctcacgac
ggcggccgctactaccgggccgatgatgccaacgtgatgcgcgaccgagacctggaggtg
gacaccaccctcaagagcctgagccagcagatcgagaacatccgcagccccgagggcacc
cgcaagaaccccgcccgcacctgccgcgacctcaagatgtgccacggcgactggaagagc
ggcgagtactggatcgaccccaaccaaggctgcaacctggacgccatcaaggtcttctgc
aacctggagacgggcgagacgtgcgtgtacccgactcaggcgtccatcgcccgcaagaac
tggtacctcagcaagaaccccaaggagaagaaacacgtctggttcggcgagagcatgagc
gacggcttccagttcgagtacggcggcgagggctcggacccggcggacgtggccatccag
ctgaccttcctgcgcctcatggccaccgaggcctcccagaacgtcacctaccactgcaag
aacagcgtggcctacatggagcaggccagcggcaacctgaagaaagctctgctgctgcag
ggcgccaacgagatcgagatccgcgccgagggcaacagccgcttcacctacggcgtcacc
gaggacggctgcacgagtcacacgggcgcctggggcaagacagtcatcgagtacaagacg
acgaagacctcgcgcctgcccatcatcgatttggctcctatggacgtcggcgctccggac
caggaattcggcatcgacatcggccccgtgtgcttcttgtaa
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