KEGG   Pseudopodoces humilis (Tibetan ground-tit): 102106381Help
Entry
102106381         CDS       T02921                                 

Gene name
LIG3
Definition
(RefSeq) DNA ligase 3
  KO
K10776  
DNA ligase 3 [EC:6.5.1.1]
Organism
phi  Pseudopodoces humilis (Tibetan ground-tit)
Pathway
Base excision repair
Module
BER complex
Brite
KEGG Orthology (KO) [BR:phi00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    102106381 (LIG3)
Enzymes [BR:phi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102106381 (LIG3)
DNA repair and recombination proteins [BR:phi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     102106381 (LIG3)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
LinkDB All DBs
Position
Un
AA seq 1022 aa AA seqDB search
MPTGGRTLSHAARALGRGIALFCPRPQLPLPRPFSSSGGVSPGCWCPLLFPRVSVPSPKQ
RRAAGAFPLSLLLGSWLRSACAAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKEIINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSTHKPSLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQESEKVPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGVIGSPQKCEEKRGEKRKASEME
DNGKKVQRGAGTAPWQGRGGRGSCSVHFHSKECFAQALLLLPPQQPLLDIFTGVRLYLAP
SVKDFDRIRRYFIAFDGDLVEEFDTASATHVIGDIDDNPGAQRVTPRWIWECIRKRRLVA
PC
NT seq 3069 nt NT seq  +upstreamnt  +downstreamnt
atgcccacgggcggcaggacgctgtcacacgctgcccgcgctctcggcaggggcatagcg
ctgttctgccctcgcccacagctccccttgccccgaccgttctcctcctctggcggagtc
agccccggttgttggtgcccgctgctgttcccccgtgtctccgtgccatccccgaagcag
cgccgcgctgccggcgcttttcccctctccctgctcttgggcagctggctgcgctcggcc
tgcgcggctgcggaggacatggcagagcagcggtactgtgtggactatgccaagcggggc
accgcgggctgcaagaagtgcaaagagaagatcgtgaaggggatggtgcgcattgggaag
atcgttcccaatcctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaagcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctacaggatgaggagaaggaaataatcaacaagtacatc
tcagaagccaattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcact
gccaagccaaagaattcagaagatgcccctgcaaactctacccacaaacccagcctgtct
gcagccaggtgtgatcccaagcacaaggattgcctgctgcgggaattccgcaagctctgt
gccatggtggctgagaagccaagctacaacgtgaaaacacagatcatccaggacttcctc
aggaaaggatctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtaattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcaggatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tctgagaccatacggatcttcttcgagcagagcaagacctgtcctccagcagccaagagc
ctcctgaccatccaggaggttgatgaattcctcatccaactgtccaagctcaccaaggag
gatgaccagcagagtgtcctgcagcagatcagccgcaggtgtacgggcaatgacctgaag
tgcatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttg
gacgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcagaaccagcaggagtctgagaaggtgccagggctgaagaggacc
ctgagcgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtatgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccct
ggtgggcaaagtatgatcctggattcagaagttctcctgattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaatgacatcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctgcacgacaacatggtggagatccccaacaggatcctgttc
tcagagatgaaacacgtcacaaaagcttcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaggatttaaagggaaattacgaaccagggaaa
cgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacactgct
gacctggtggtgctgggggctttctatggacagggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctct
ggtggccacgatgatgccacactggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggctgagttctcc
aaggccgaggcccacactgcggacgggatctccatccgcttcccgcgctgcacccgcatc
cgcgacgacaaggactggcagacagccaccaacctgcagcagctgaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacagctggggaggaagacgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggagtgatt
ggatcccctcagaaatgcgaggagaaacgaggggagaagagaaaagcatccgagatggag
gacaatggaaaaaaggtacagaggggggctgggacagcaccatggcagggcaggggaggc
cgaggcagttgctctgttcacttccattccaaggaatgttttgcccaagctctgcttctc
cttcccccccagcagccactgctggacattttcacgggggtgaggctctacctggcgccc
tccgtcaaggacttcgaccgaatccgccgctacttcatcgccttcgacggggacctggtg
gaggagttcgacacggcctcggccacccacgtgattggggacattgatgacaaccccggg
gcgcagcgggtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtggcc
ccgtgctag

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