Pseudopodoces humilis (Tibetan ground-tit): 102106381
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Entry
102106381 CDS
T02921
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102106381 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phi03400
]
102106381 (LIG3)
Enzymes [BR:
phi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102106381 (LIG3)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102106381 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
aRib
DUF3802
Motif
Other DBs
NCBI-GeneID:
102106381
NCBI-ProteinID:
XP_014110500
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MPTGGRTLSHAARALGRGIALFCPRPQLPLPRPFSSSGGVSPGCWCPLLFPRVSVPSPKQ
RRAAGAFPLSLLLGSWLRSACAAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEEKEIINKYI
SEANSKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSTHKPSLS
AARCDPKHKDCLLREFRKLCAMVAEKPSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETIRIFFEQSKTCPPAAKS
LLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQQESEKVPGLKRTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGVIGSPQKCEEKRGEKRKASEME
DNGKKVQRGAGTAPWQGRGGRGSCSVHFHSKECFAQALLLLPPQQPLLDIFTGVRLYLAP
SVKDFDRIRRYFIAFDGDLVEEFDTASATHVIGDIDDNPGAQRVTPRWIWECIRKRRLVA
PC
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcaggacgctgtcacacgctgcccgcgctctcggcaggggcatagcg
ctgttctgccctcgcccacagctccccttgccccgaccgttctcctcctctggcggagtc
agccccggttgttggtgcccgctgctgttcccccgtgtctccgtgccatccccgaagcag
cgccgcgctgccggcgcttttcccctctccctgctcttgggcagctggctgcgctcggcc
tgcgcggctgcggaggacatggcagagcagcggtactgtgtggactatgccaagcggggc
accgcgggctgcaagaagtgcaaagagaagatcgtgaaggggatggtgcgcattgggaag
atcgttcccaatcctttcaccgagtccggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaagcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctacaggatgaggagaaggaaataatcaacaagtacatc
tcagaagccaattccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcact
gccaagccaaagaattcagaagatgcccctgcaaactctacccacaaacccagcctgtct
gcagccaggtgtgatcccaagcacaaggattgcctgctgcgggaattccgcaagctctgt
gccatggtggctgagaagccaagctacaacgtgaaaacacagatcatccaggacttcctc
aggaaaggatctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtaattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcaggatttttaactgcaaccaggaagaaatggtccgggacctggagcagggagatgtt
tctgagaccatacggatcttcttcgagcagagcaagacctgtcctccagcagccaagagc
ctcctgaccatccaggaggttgatgaattcctcatccaactgtccaagctcaccaaggag
gatgaccagcagagtgtcctgcagcagatcagccgcaggtgtacgggcaatgacctgaag
tgcatcatcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcacgtgttg
gacgctctggatcccaacgcctacgaggcgttcaaggcctcgcggaacctgcaggacgtg
gtggagcgggtgctgcagaaccagcaggagtctgagaaggtgccagggctgaagaggacc
ctgagcgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtatgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccct
ggtgggcaaagtatgatcctggattcagaagttctcctgattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaatgacatcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctgcacgacaacatggtggagatccccaacaggatcctgttc
tcagagatgaaacacgtcacaaaagcttcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaggatttaaagggaaattacgaaccagggaaa
cgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacactgct
gacctggtggtgctgggggctttctatggacagggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgctct
ggtggccacgatgatgccacactggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggctgagttctcc
aaggccgaggcccacactgcggacgggatctccatccgcttcccgcgctgcacccgcatc
cgcgacgacaaggactggcagacagccaccaacctgcagcagctgaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacagctggggaggaagacgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggagtgatt
ggatcccctcagaaatgcgaggagaaacgaggggagaagagaaaagcatccgagatggag
gacaatggaaaaaaggtacagaggggggctgggacagcaccatggcagggcaggggaggc
cgaggcagttgctctgttcacttccattccaaggaatgttttgcccaagctctgcttctc
cttcccccccagcagccactgctggacattttcacgggggtgaggctctacctggcgccc
tccgtcaaggacttcgaccgaatccgccgctacttcatcgccttcgacggggacctggtg
gaggagttcgacacggcctcggccacccacgtgattggggacattgatgacaaccccggg
gcgcagcgggtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtggcc
ccgtgctag
DBGET
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