Pseudopodoces humilis (Tibetan ground-tit): 102110873
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Entry
102110873 CDS
T02921
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102110873 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phi03400
]
102110873 (LIG4)
Enzymes [BR:
phi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102110873 (LIG4)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102110873 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
102110873
NCBI-ProteinID:
XP_005516544
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFAHLCSTLEQIQKCKSRPEKTKYFKVFLESWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILNTVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLPIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNIFEDVEFCVMTGTGKYSKTELESRIAQCGGSVVQNPGPETYCVVVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPVDLIAELEERYWWNNCQLGIFRGSTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKVLRRTFGKKFKIVSELWVAHSVE
EGVAENEYQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcgcagcctcctcctaaaaaaacggtggcctctcatgtgcct
tttgcacatctgtgttctactctggagcaaatacagaagtgcaaatctcgtccagagaaa
accaagtatttcaaggtttttctggaatcctggaggaagttccatgatgcgcttcatcaa
aaagagaaggatgtcacagattccttttacccggctatgcgacttattctcccacagttg
gaaagagagaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaata
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttctctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcacccctagaaggttcgttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttgggccatgaagtactgagcaaaagatatgaaatcttaaatactgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggagggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctctgtgctgttgcggagacaccccctccaaatgaa
aaaccgaccattttccactccatatgtcgtgttggctctggctataccatgaaagagttg
tatgatctaggcttgaaactggctaaacattggaagccgtaccataggaagaaccctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcaggagcaaagcacaaggaaagctggcatctaagcacctt
cctatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagccgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaacaggaaaatactcaaag
actgagctggaaagcagaatagctcaatgtggtggcagtgtggtacagaacccggggccg
gagacatactgtgtcgttgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgtgcagctcaag
gaggtattctcaagaatgaaagacaataaggcaatgcctgtggacttgattgcagagcta
gaagaacgttattggtggaacaattgtcagcttggcatattcagaggaagcactgtttat
gtggactgttatgctgttgttaatgagcccgaaagcaaaatccctggaactacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
aggacatttgggaaaaaatttaaaattgtatctgagctgtgggtagcacactcagtagag
gaaggagttgcagagaatgaatatcagtacttagtttaa
DBGET
integrated database retrieval system