Pseudopodoces humilis (Tibetan ground-tit): 102111987
Help
Entry
102111987 CDS
T02921
Symbol
COL12A1
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
phi00535
]
102111987 (COL12A1)
Proteoglycans [BR:
phi00535
]
Extracellular matrix (ECM) proteoglycans
Others
102111987 (COL12A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Interfer-bind
Copine
Toxin_R_bind_N
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
102111987
NCBI-ProteinID:
XP_014118945
LinkDB
All DBs
Position
Unknown
AA seq
3122 aa
AA seq
DB search
MKTALCSAVAALCAAALLSSIEAEVNPPSDLNFTIIDEHNVQMSWKRPPDAIVGYRVTVV
PTSDGPTKEFTLSPSTTQTVISDLIPDVEYVVSIASYDDREESLPVFGQLTIQTGGPGIP
EEKKVEAQLQRCSISAMTDLVFLIDGSWSVGRNNFGYILDFMVALVSAFDIGEEKTRVGV
VQYSSDTRTEFNLNQYFRRSDLIDAIKRIPYKGGNTMTGEAIDYLVQNTFTESAGARKGF
PKVAIVITDGKAQDDVEIPARELRNIGVEVFSLGIKAADAKELKLIASQPSLKHVFNVAN
FDGIVDIQNEIILQVCSGVDEQLGELVSGEEVVEPPSNLVATQISSKSVRITWDPSTSQI
TGYRLQFIPMIAGGKQHVLSVGPQTTALNVKDLSPDTEYQINVYAMKGLTPSEPITIMEK
TQQVKVQVECSRGVDVKADVVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPRKVQISL
VQYSRDPHMEFSLNRYNRVEDIIQAINTFPYRGGSTNTGKAMTYVREKVFVTSKGSRPNV
PRVMILITDGKSSDAFKEPAIKLRDADVEIFAVGVKDAVRTELEAIASPPADTHVYTVED
FDAFQRISFELTQSVCLRIEQELAAIRRKSYVPAKNMVFSDITSESFKVSWSPAGSEVLS
YLIKYKVAVGGDEFIVSVPASITSSVLTNLLPETTYTVSVISEYEDGDGPPLDGEETTLE
VKGAPRNLRITDETTDSFVVGWTPAPGNVLRYRLVYRPLAGGERRQVTASANDRSTTLQN
LIQDTRYEVSVVPEYQSGPGNSLTGYAKTDEVRGNPRNLRISDATTSTMKLSWGAAPGKV
QQYFITYTPVTGGETKEVTVKGDTTSKVLKGLDQATRYALTVSALYASGAGDALSGEGET
LEERGSPRNLVTTDITDTTVGLSWTPAPGTVNHYRIVWKSLYDDTMGEKRVPGNTVDAVI
EGLEPETKYRVSVHAAYSSGEGDPVEGEAFTDVSPNARTVTVDNETENTMRVRWQPSPGK
VLSYRVNYKPRSGGRQMFGRVNAPATSIVLKRLKPRTTYDLTVVPIYDFGHGKSRKGEGT
TASPFKPPRNLRTSDSTMSSFRVTWEPAPGRVKGYKVTFHPTEDDGSLGELIVGPYDSTV
VLEELRAGTTYKVNVFGMFEGGESNPLVGQEMTTLSDTTTEPFLSRGLECRTRAEADIVL
LVDGSWSIGRPNFKTIRNFIARIVEVFDIGPDKVQIGLAQYSGDPRTEWNLNAYRTKQSL
LEAVANLPYKGGNTLTGMALDFILRNNFKPAAGLRPRARKIGVLITDGKSQDDVVTPSRK
LRDEGVELYAIGIKNADENELKQIATDPDDIHAYNVADFSFLANIVDNVTTNLCNSVKGP
GDLPPPSNLVISEVTPRSFRLRWSPPPESVDRYRVEYYPTSGGSPKQFYVSRMERTTVLK
DLQPETEYVVNVFSVVEDESSEPLIGRETTLPISSVRNLNVYDIGSTYMRVRWEPLNGAT
GYLLTYEPVNATVPATEKEMRVGPSVNEVQLVDLIPNTEYTLTAYVLFGDMKSDPLTTQE
VTLPLPGPRGLKIQDVTHSTMNVVWDPAPGKVRKYILRYKIADDADVKEVELDRLKTSIT
LSDLSSQTLYNIKVVAVYDEGESIPTNAEAVTQPVPAPVNLRITDITTNSFRGTWDHGAP
DVSLYRITWGPYGRAEKQETILNGDENSLVFENLNPDTLYDVSVTAIYPDESESDDLIGS
ERTLPLVPITTQAPKSGPRNLQVYNATSHSLTVKWDPASGRVQRYRIIYQPISGDGPEQS
TTVGGRQNSVVIQKLQPDTPYAITVSSMYADGEGGRMTGRGRTKPLTTVKNLLVYDPTTS
TLNVRWDHAEGSPRQYKVFYGPTAGGAEEMTTVPGNTNYVILRTLEPNTPYTVTVVPVFP
EGDGGRTSDTGRTLERGTPRNIQVYNPTPNSMNVRWEPAPGPVQQYRINYAPLSGPRPSE
SIVVPGNTRDVILERLTPDTAYSINVIALYADGEGNPSQAQGRTLPRSGPRNVRIFDETT
NSLSVQWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGIRNNVILQPLQSDTPYKITVVAV
YEDGDGGQLTGNGRTVGLLPPQNMYITDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEP
REFFVGEVTSYTLHNLSPSTTYDVSVYAQYDSGMSIPLTDQGTTLYLNVTDLTSYKVGWD
TLCIRWSPHRSATSYRLKLNPTDGSRGQEITIRGSETSHCFTGLSPDTEYNATVFVQTPN
LEGPPVSMREHTVLKPTEAPTPPPTPPPPPTIPPARDVCRGAKADIVFLTDASWSIGDDN
FNKVVKFVFSTVGAFDLINPAGIQVSFVQYSDEAKSEFKLNTFDDKAQALGALQNIQYRG
GNTRTGKALTFIKEKVLTWESGMRRGVPKVLVVVTDGRSQDEVRKAATVIQHSGFSVFVV
GVADVDYNELAKIASKPSERHVFIVDDFDAFEKIQDNLVTFVCETATSTCPLIYLEGYTS
PGFKMLESYNLTEKHFASVQGVSLESGSFPSYVAYRLHKNAFVSQPIREIHPEGLPQAYT
IILLFRLLPESPNEPFAIWQITDRDYKPQVGVVLDPANKVLSFFNKDTRGEVQTVTFDSD
DVKKIFYGSFHKVHIVVTSSNVKIYIDCSEILEKPIKEAGNITTDGYEILGKLLKGDRRS
ATLEIQNFDIVCSPVWTSRDRCCDLPSMRDEAKCPALPNACTCTQDSVGPPGPPGPAGGP
GAKGPRGERGLTGSSGPPGPRGETGPPGPQGPPGPQGPNGLSIPGEPGRQGMKGDAGQPG
LPGRSGTPGLPGPPGPVGPPGERGFTGKDGPTGPRGPPGPAGAPGVPGVAGPSGKPGKPG
DRGTPGAPGMKGEKGDRGDIASQNMMRAVARQVCEQLINGQMSRFNQMLNQIPNDYYLNR
NQPGPPGPPGPPGAAGTRGEPGPGGRPGFPGPPGVQGPPGERGIPGEKGERGTGSQGPRG
LPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNAGIRGPPGPPGYCDSSQCASIPYNGQG
FPEPYVPESGPYQPEGEPFIVPMESERREDEYEDYGVEMHSPEYPEHMRWKRSLSRNAKT
KP
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagcgctgtgctcggcagtcgctgctctgtgtgcagccgccctcctctcctcc
atcgaggctgaagttaatccaccatcagacttgaattttacaattatagatgaacataat
gttcaaatgtcatggaaaaggccaccagatgcaatagtgggttacagagtaactgtggtt
ccaacaagtgatggacctactaaagaatttactctttcacctagcactacccaaactgtc
atatcagatcttatacctgatgtagagtatgttgtatcaatagcttcatatgacgacaga
gaggagagtcttcctgtatttggtcagctgacaattcagacaggcggcccagggatacca
gaggaaaagaaggttgaggctcaattacaaagatgctccataagtgcaatgacagattta
gttttcctgatagatggttcatggagtgtaggaagaaataacttcggatatattctggac
ttcatggttgcccttgtatcagcttttgacattggggaagaaaagacgagagttggagtt
gttcagtacagttcagatacaagaacagagttcaatttaaatcagtatttcagaagaagt
gatcttattgatgcaattaaaaggataccttacaaaggtggcaacacaatgacaggtgag
gctattgattaccttgttcaaaacactttcactgagtctgctggagcaagaaaaggcttt
cccaaagtagcaattgtcattactgatggaaaagctcaagatgacgtagaaattcctgca
agagagcttcgcaacataggagtggaagttttttccttgggtatcaaagcagcagatgca
aaggaactcaagctaatcgcatctcagccgtcactgaagcatgtgttcaatgtggctaat
tttgatggaattgtggatatacagaatgaaattatcttgcaagtgtgctctggtgtcgat
gaacaactaggtgaactggttagtggggaagaagtggtggagcctccttcaaatctcgtg
gccactcagatctcctcaaagtctgttagaatcacttgggatccatccacaagccaaata
actggctatcgtctgcagttcattccaatgatagctgggggaaaacagcatgtactgagt
gtgggtcctcagactactgctctgaatgttaaagatctctctccagacacagagtatcaa
attaatgtttatgcaatgaaaggactgacccccagtgagccaataaccataatggaaaaa
acacaacaagtaaaagttcaagtggaatgctcacgtggtgtggatgtaaaagctgatgtt
gtatttttagtggacggttcctatagcattggtatcgccaattttgtaaaagtaagagcc
tttttggaagtgttagttaaaagctttgagatatcacctcgaaaagtacagataagtctt
gtccagtacagcagagatccccatatggagttttctttgaacagatacaacagagtggaa
gacataattcaggctattaacaccttcccctacagaggtggatctaccaacacaggcaaa
gcaatgacgtacgtgagggagaaagtatttgttaccagcaaaggatcaagaccaaacgtg
ccaagagtcatgattcttatcactgatggaaaatcatcagatgcttttaaagaacctgca
attaagctgagagatgcagatgtagaaatatttgcggttggcgtgaaggatgcagtgcgt
acggagttggaagcaatagcatcacctcctgcagacacccatgtttacaccgtggaagat
tttgatgcttttcaaagaatatcatttgaacttacacagtctgtgtgcctgcgaattgag
caggaactggctgccataaggagaaaatcttatgtacctgcaaagaacatggtcttttcc
gacataacatcagagagtttcaaagtgagctggtctccagctggatctgaggttttgtcc
tatctcattaaatacaaagtagcagtcggtggagatgaattcattgtttcagtaccagct
tcaattactagctcagttctcaccaacttactacctgaaactacttacacagtcagtgtg
atttctgaatatgaagatggtgatggccctcccttggatggagaggaaaccaccttagaa
gttaaaggtgctcctcgaaacttaaggataacagatgaaactactgatagctttgttgtt
ggctggactccagctccaggaaatgtgctacggtacaggcttgtttatagaccacttgct
ggaggagaaaggagacaagtgactgcctcagcaaatgatagatcaactactctgcagaat
ttgatccaagatacaagatatgaagtgtctgttgttcccgagtatcagtctggacctggg
aattcattgactggatatgcaaaaactgatgaagtccgaggaaatccaaggaatttgaga
atttctgatgctacaacctcaacaatgaagctgtcttggggtgctgctcctggcaaagtg
cagcagtactttataacatacacaccagtcacaggaggtgaaactaaggaagtgactgtg
aaaggtgacactacctctaaagtgctgaaaggcttggaccaagccactaggtatgcactg
actgtgtctgccttgtatgcctctggagcaggagacgccctttctggagagggagaaaca
cttgaagaacgtggttcaccacgtaatttggttaccacagacataactgacactacagtt
ggattatcatggacaccagctccaggaacagttaaccattacaggatcgtatggaaatca
ctttatgatgataccatgggagagaagagagtccctggaaatacagtggatgctgtgata
gaaggcttggagccagagactaaatacagggtttcagtacatgcagcctacagcagtgga
gaaggagacccagtagaaggagaggcttttactgatgtgtcaccaaatgccaggactgtg
acagtagacaacgagacagaaaatacaatgagagttagatggcagccttcgcctgggaaa
gtcttgtcttaccgtgtgaactacaaaccacgcagtggaggaagacaaatgtttggaaga
gtaaatgctcctgctaccagcatagtgctaaaacgacttaagccccgaactacgtatgac
ctaactgttgttccaatttatgattttggacacgggaaatcaagaaaaggagaaggaaca
acagcctctccctttaagccacctcgaaatctgagaacttctgattcaactatgtcaagt
ttccgagtaacctgggagccagccccagggagagtgaaggggtacaaagtgactttccac
cctactgaagatgatgggagtcttggagaattaatagtggggccatatgacagcacagtg
gtattggaggagcttagggcaggaacgacctataaggtaaatgtttttgggatgtttgaa
ggaggagagagcaaccctctggttggacaagagatgactaccctttcagatactactacg
gagccatttttatctagaggtttagagtgtagaaccagagcagaagccgatattgtgctg
ctggtggatggctcgtggagtattgggcggccaaattttaaaaccatcaggaacttcatt
gcccgtattgttgaagtttttgatattggtcctgacaaagtacagattggtcttgcacag
tatagtggtgatcccaggacagaatggaatctcaatgcttaccgaaccaaacagtctttg
ttagaggctgtagccaacttaccatacaaaggaggcaatactctaacaggaatggccttg
gatttcatcttaagaaacaacttcaaaccagctgctggcttaaggcccagagctcgcaaa
attggtgttctcatcactgatggcaaatcgcaagatgacgtagtcaccccttcaagaaaa
ctcagagatgagggagtggaactgtatgctataggtattaaaaatgcagatgagaacgaa
ttgaagcagattgcaacggatccagacgacatccatgcttacaatgttgcagatttctcc
ttcctggctaacattgttgataatgtaaccacaaatctgtgtaacagtgtgaaaggtcca
ggtgatttgccacctccttcaaatttagttatttcagaagtgacacctcgctctttcaga
ctgagatggagcccacctcctgagagtgttgatagatacagagtagaatattatcctacc
tctggaggtagccctaaacagttttatgtaagtaggatggaaagaacaacagttctgaaa
gatctgcaacctgaaacagaatatgtggttaatgtgttttctgtggtagaagatgaaagc
agtgaacctctgatcggcagggaaacaactttgccaatctcttcagttagaaacttgaat
gtttatgacattggttcaacttacatgcgagtgagatgggaacctctcaatggagctact
ggttatttgttaacatatgaacctgtgaacgctaccgtcccagccacagagaaagagatg
cgtgtgggaccgtcagtgaatgaggtgcagctggtagatctcatccccaacaccgagtac
actttaacagcttacgtattgtttggtgatatgaagagtgacccactcaccacacaggaa
gtgacgttacctttgcctggacccagaggtttaaaaattcaggatgttactcacagcacc
atgaatgttgtttgggatcctgccccaggaaaagttcgaaaatacatcctaagatacaaa
atagctgatgatgctgatgtaaaggaggtggaacttgacagactcaaaaccagcattact
ctctctgacctctcctcccaaacgctgtacaatataaaagttgttgctgtatatgacgaa
ggggaatccataccaacaaatgcagaagctgtcactcagcctgtgccagcaccagtcaat
ctcagaatcacagatataaccacgaatagtttcagaggtacttgggatcatggagctcca
gatgtctctctgtatagaataacatgggggccctatggaagagcggaaaaacaggagact
atcttaaatggggatgagaatagtttggtctttgaaaatttgaatccagatacattatat
gatgtctcagttactgccatctatcctgatgaatcagaaagtgatgatctcattggcagt
gaacgaacattacccttggtacctatcactacacaagccccaaagagtggcccacgaaac
cttcaggtgtacaatgcaacttcacacagtttgactgtcaaatgggatccagccagtggt
cgagtgcagagatacaggatcatttaccagcctatcagtggggatggccctgagcagtcg
actactgttggaggacgacagaacagcgtggtgatacagaagctgcagcctgacacacca
tatgctattactgtgtcatcaatgtacgcagacggtgaggggggacgaatgacaggacga
ggcagaaccaaacctctcaccactgtgaagaacttgctagtttatgacccaaccaccagt
actctgaatgttcgatgggatcatgcagaaggaagtcctcgccagtacaaagtgttttat
ggacctacagctggaggtgcagaagaaatgaccacagttccaggaaatacaaactatgtc
atcctgaggactcttgaacccaacacaccttacactgtaactgtggttccagttttccca
gagggggatggtggacgtacctctgacactggacgcactttggagagaggaacaccaaga
aacattcaagtttacaatcccacaccaaacagcatgaatgtccgttgggaacctgctcca
ggtccagtgcagcagtatagaattaattatgctccactgtctggcccaaggccatcagaa
tctattgtggtgcccggcaacactcgtgatgtgattctggagcgcttgactcccgacact
gcttactcaataaatgttatagctctgtatgcagatggagagggaaatccaagccaagca
cagggaagaacattgcctcgcagcggtccaaggaatgtgagaatatttgatgagactaca
aacagcctttctgtacaatgggaccatgcggatgggccagtccagcagtacagaatcatt
tattcacccactgtgggggaccctatcgatgaatacacaacagttcctggcataaggaat
aatgtgatactacaaccattacaatcagatacaccatataaaattactgttgttgctgtg
tatgaagatggagatggtggacaattgactggaaatggcagaacagttggccttcttcct
cctcaaaatatgtatataactgatgaatggtatacacgtttcagagtttcctgggatcct
tcaccatcccctgttcttggctataaaattgtatacaaacctgtgggttcaaatgagccc
agggagttttttgtgggagaagtgacttcctacactttgcataatctgtctcccagtact
acttatgatgtgagtgtttatgctcagtatgattctggaatgagcatacctttgacagat
caaggcactacattatatttgaatgtcactgacctaacaagttacaaagtgggttgggat
actctctgtatccggtggtcacctcatcggtcagcaacctcctacagactgaagctaaac
ccaaccgatggttccagaggacaggaaatcacaatacgtgggtcagaaacgagtcactgt
tttactggcctctcaccagacacagaatacaatgctactgtctttgttcagacccctaac
cttgagggacctccagtctctatgagggagcatacagtcctcaaacctacagaggcgcca
actccaccacctacgcctcctccacctcccacaatccctccagctcgggatgtatgcaga
ggtgccaaagcagacattgtattcttgactgatgcttcctggagtattggtgatgacaat
ttcaacaaagtagtgaaatttgtttttagtactgtaggagcctttgatttaatcaatcct
gctggaattcaggtttcgtttgtgcagtacagtgatgaagcaaaatctgaatttaaactg
aatacatttgatgacaaagcccaggccctgggagctcttcaaaatattcagtacagagga
ggaaacacaaggactggcaaagccctaacatttattaaagaaaaagttttgacttgggag
agtggcatgagacgaggtgttcccaaggtacttgttgttgtcacagatggtcggtctcag
gatgaggtgaggaaggcagcaacagtcatacagcactctggcttcagtgtctttgtggtt
ggtgtggctgatgtagattacaatgaactggccaagattgccagcaagcccagtgagcgt
cacgtatttattgttgatgactttgatgcctttgaaaagattcaagataacctcgtcacc
tttgtgtgtgagacagctacctcaacttgtccccttatttacttggagggatacacttca
cctggtttcaagatgctggaatcatacaatctaacagagaagcattttgcttctgtacaa
ggagtttcactggaatcgggctctttcccaagctacgtagcttatagactccacaaaaac
gcctttgtcagccagccaatacgggagattcacccagagggattgccacaggcgtacact
atcattctgttattccgtcttctgccagaatcccccaatgagccctttgcaatttggcag
attacagacagagattacaaaccacaagttggagttgtacttgaccctgccaacaaagtg
ctgtcattctttaacaaggatacaagaggagaggttcaaactgtaacttttgatagtgat
gatgtaaagaaaatcttttatggaagcttccataaggttcatattgttgtaacttcatca
aatgttaagatttacattgactgcagtgaaatactggaaaaaccaatcaaggaggctggc
aatatcacaactgatggctatgagatacttgggaaacttctaaaaggcgaccgaagatca
gcaacattagaaatccagaattttgacattgtatgcagtccagtttggactagcagagat
agatgctgtgatctgccttctatgagagatgaagcaaagtgcccagctcttccaaatgct
tgtacctgtactcaagacagtgtgggaccgccaggacctcctggaccagctggtggccca
ggcgctaaaggtcccagaggagaaaggggtttgactggatcatctgggcctcctggtcct
cgtggtgagacaggtcctccaggtcctcaaggtcccccaggcccacagggtcccaatggg
ctgtcaatcccaggagaaccgggtcgtcaaggaatgaaaggggatgctggccagcctgga
ctcccagggagatcgggaacgccaggtttacctggtccacctggaccagtaggacctcca
ggagaaaggggtttcacaggaaaagatggtcccacaggtcccagaggcccaccaggacca
gcgggtgctcctggagttccaggagttgctggcccaagtggaaaaccagggaaaccggga
gatcgtgggacaccaggtgcacctggaatgaagggagaaaaaggtgacaggggtgatatt
gcttctcaaaacatgatgcgagcagttgcaagacaagtgtgtgaacagctgataaatggt
caaatgagccgcttcaatcaaatgctaaatcaaatcccgaatgattattatttaaaccga
aaccagccagggccaccaggtccacctggtcccccaggagctgctgggacaagaggagaa
cctggacctggaggaagaccaggattcccaggacctcctggggttcaaggaccacctggt
gaaagaggaatccctggagagaaaggtgaaagagggactggatcccaaggaccacgaggt
ttgccaggaccacctggtccacaaggagaatctagaactggtccaccaggctccacagga
tcacgaggaccaccagggccaccaggccgtcctggaaacgcgggtattcggggtcctcca
gggccaccaggatattgtgattcatcccagtgtgctagcatcccttacaatggccaagga
tttccagaaccatacgtgcctgaaagtggaccctatcagcctgaaggtgaaccctttata
gtacctatggagtcagaaaggagagaggacgagtatgaggactatggagttgaaatgcat
tcaccagaataccctgagcacatgcgctggaaaagatcactgtcaagaaatgcaaaaaca
aaaccgtag
DBGET
integrated database retrieval system
