Pseudopodoces humilis (Tibetan ground-tit): 102113870
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Entry
102113870 CDS
T02921
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X4
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Pathway
phi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102113870 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phi03000
]
102113870 (KDM2B)
04121 Ubiquitin system [BR:
phi04121
]
102113870 (KDM2B)
03036 Chromosome and associated proteins [BR:
phi03036
]
102113870 (KDM2B)
Enzymes [BR:
phi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
102113870 (KDM2B)
Transcription factors [BR:
phi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
102113870 (KDM2B)
Ubiquitin system [BR:
phi04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
102113870 (KDM2B)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102113870 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
102113870 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
102113870
NCBI-ProteinID:
XP_005524325
LinkDB
All DBs
Position
Unknown
AA seq
1253 aa
AA seq
DB search
MKLSKKMEAKKDSGRRLRCIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHLQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEAAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGAASAVKLAANRSTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVPDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKSQE
PTMRKRRRSWKAPDDRTAMIKPLRRLKQEPEDELPEAPPRSKDSDQSRSSSPTAGPSTEG
AEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPESENEEP
KRVLNNSERLHRFSKGLNGTPRELRHHQLMPSLRSTPRGIARPPPSLSPPKCIQMERHVI
RPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCDKRLWT
KIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSGCSWIA
VSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRLAGL
DITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTD
QCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcaaagaaagactctggaagaagattgcgctgcatc
ggccgaaggaggtacgatgagaacgaggacctctcggacgtggaggaaatcgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacggcaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
ctcatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgccggatcgtggatgtgatggatgtgaacaca
cagagaggagtggagatgagcatgtctcagtttgtgaggtactatgagaccccagaggcc
cagcgggagaagctctacaacgtcatcagcctggagttcagtcacaccaagctggagaac
attgtcaagcgccccaacgtggtggacttagtcgactgggtggataatatgtggccacag
cacttgaaggagagacagacagatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattcca
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcagagtgat
atctttctgggagacagggtggagcggtgccaaagaattgagctgaaacaaggctacacg
ttcttcattccttcagggtggatacacgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccggtatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatctccaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggaggctgcagggaggaaacaaaaagccacagtaatgaggtacctaaaa
agaactttgtctaatgagtcagatgacagcgtaaaatcaacgacccctacggactatccc
aaaacacccacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaggccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagacccgcaggctctcctggaggacatgaagaacata
ctgaaggaacacgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcgggcggcccaaggggaagctgggtgct
gcctctgcggtgaagctcgcggccaaccggagcacagcgggcgcgcggcggcggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgcggagagtgccacttctgcaag
gacatgaagaagttcggagggcccggcaggatgaagcagtcctgcatcatgaggcagtgc
atcgctccggtgctgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaggag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccacgcagggaaaactggaaaacaa
aagcgcggaccaggatttaaatacgcatcaaatctcccgggctcgttgctgaaggagcag
aaaattaacagagacaacaaggaagtgccagatgctgccaaaaggaaaggggactgcgag
gagactcccaggcggaaatcggaagaacattccaaaaaggctccagttgactcaatcctg
aggagaaaatctgacgaggtgcatctgtggagaaaacggaaattcgagaaatcccaggaa
cccacgatgagaaagcggcggcgatcgtggaaggccccggatgaccgaactgccatgatc
aaacccctgcggcgcctcaagcaggagcccgaggatgagctgccagaagcaccccccagg
tccaaggatagcgaccagtctcgctccagctcacccacagccgggcccagcacggagggc
gccgagcccagggacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataag
gaactgagcaaggagctcagcaaagagcttaaccaggagatccaaaaaaccgagaacagc
cttgccaatgagaaccaccaacccatcaaatctgaaccggagagcgagaacgaggaaccc
aagcgtgtgttgaacaacagcgagagactccataggttcagcaaagggttgaacgggact
ccccgggagctgaggcaccaccagctcatgcccagcctgcgcagcaccccccggggaata
gcccggcccccgccctcgctgtcgccccccaagtgcatccagatggagcggcacgttatc
cggccacctcccatcagcccccctccggactcgctccccctggatgatggggcagcccac
gtgatgcagagggaagtctggatggctgtctttagctacctcagtcatagagacttgtgc
atctgtatgagagtttgcaagacctggaacagatggtgctgtgacaaaagattatggacc
aaaatagatttaaaccattgtaaatccatcactccacttatgcttagtggcattattagg
agacagcctgtaacccttgatcttagctggacaaatatatctaaaaagcagctgagttgg
cttatcaacagactgccaggtctgcgggacctgctgttatcagggtgctcatggatagca
gtgtcagcactttgtagctccagttgtcccttgctgcgaactctggacgtgcagtgggca
gaaggactgaaagacgcacaaatgagagacctcctgtccccacccacggacaaccggcca
ggccagatcgacaaccggagcaagctacggaacatcgtggagctgcgcctggccgggctg
gatatcacggatgcttcgctgcggctgatcatcaggcacatgcccctgctctccaaactc
aatctcagttactgtaaccacgtgacagatcagtctattaacctgctgaccgctgtcgga
accaccacgcgggattcattaacagaaattaatttatcagactgcaataaggtcactgac
cagtgcctgtcctacttcaaacgttgtgggaacatctgccagatcgacctgaggtactgc
aagcaagtgacgaaggagggctgtgagcagttcatagcggagatgtccgtaagtgtccag
tttgggcaggtggaagaaaaacttctgcaaaaactgagttag
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integrated database retrieval system
