Pyrococcus horikoshii: PH1622
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Entry
PH1622 CDS
T00014
Symbol
PH1622
Name
(GenBank) 559aa long hypothetical DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pho
Pyrococcus horikoshii
Pathway
pho03030
DNA replication
pho03410
Base excision repair
pho03420
Nucleotide excision repair
pho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PH1622 (PH1622)
03410 Base excision repair
PH1622 (PH1622)
03420 Nucleotide excision repair
PH1622 (PH1622)
03430 Mismatch repair
PH1622 (PH1622)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pho03032
]
PH1622 (PH1622)
03400 DNA repair and recombination proteins [BR:
pho03400
]
PH1622 (PH1622)
Enzymes [BR:
pho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PH1622 (PH1622)
6.5.1.6 DNA ligase (ATP or NAD+)
PH1622 (PH1622)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
PH1622 (PH1622)
DNA replication proteins [BR:
pho03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
PH1622 (PH1622)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
PH1622 (PH1622)
DNA repair and recombination proteins [BR:
pho03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
PH1622 (PH1622)
NER (nucleotide excision repair)
Other NER factors
PH1622 (PH1622)
MMR (mismatch excision repair)
Other MMR factors
PH1622 (PH1622)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Tcp10_C
Motif
Other DBs
NCBI-ProteinID:
BAA30734
UniProt:
O59288
LinkDB
All DBs
Position
1439153..1440832
Genome browser
AA seq
559 aa
AA seq
DB search
MKYIELAQLYQKLEKTTMKLIKTRLVADFLKRVPEDHLDFIPYLILGDVFPEWDERELGV
GEKLLIKAVSMATGVDPKEIENSVKDTGDLGESIALAIKRRKQKSFFSQPLTIKRVYQTL
VKIAETTGEGSQEKKMKYLANLFMDAEPLEAKYLARTVLGTMRTGVAEGLLRDAIALAFH
VKVELVERAYMLTSDFGFVAKIAKAEGNEGLEKVTIQLGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGEKVIIYSRRLENVTRAIPEIVEAIKEAIEPEKVIVEGEL
VAIGEEGRPLPFQYVLRRFRRKHNIEEMMKKIPLELNLFDVLYVDGKSFVDTKFIERRKK
LEEIVKPNGKIKVAENLITKNAEEAEKFYKRALEMGHEGLMAKRLDAVYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFT
KMLKPLIVKEEGKRVVIQPKIVIEVTYQEIQKSPKYRSGFALRFPRYVALRDDKGPEDAD
TIERIAQLYELQERIKGKV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaagtatatcgagcttgcccaactttatcaaaaattggaaaaaacaacaatgaaactt
attaaaacaagactcgttgctgattttttgaagagggttccagaagatcatttagacttc
attccatacttaatactgggagatgtattcccagagtgggatgaaagggagcttggagtt
ggggagaagctgttgataaaagcagtctcaatggcaacaggtgttgacccgaaggagata
gagaactcggtcaaagatactggagatcttggggaaagtattgccctcgccattaagaga
agaaagcagaaatcattcttctcccaaccattaacaattaagagggtctaccaaactcta
gttaaaatagctgagactactggagagggaagtcaagagaaaaaaatgaagtatttagcc
aacctatttatggatgctgagcctttagaggcgaaatacctcgccagaacagttctagga
accatgagaacgggagtggcagaaggattgctaagagatgcaatagctttggcattccac
gtgaaggtagagctagttgaaagggcttacatgctcacgagcgattttgggtttgtggca
aaaatagcaaaagccgaaggaaatgaaggacttgagaaggtaacaatccagttagggaag
cctataaagccaatgctagctcaacaagccgctaacattaaggaggcccttttagaaatg
gggggagaggccgagttcgaaattaagtacgatggagcaagagttcaagttcacaaagat
ggagagaaggtgataatatactcaaggagactggaaaatgtaaccagggcaattccagaa
attgttgaagccataaaggaagctattgagccagaaaaagttatagttgaaggggaactt
gtagcaataggagaagagggaagacctttaccattccagtatgttcttcgcaggttcaga
aggaagcacaatatagaggagatgatgaagaagataccattggagctaaatctcttcgat
gttctctatgtcgacggtaagagctttgtagatacaaagtttatagagagaaggaagaaa
cttgaagagatcgttaagccaaacggaaagataaaagtagcagagaacctcataactaag
aacgctgaagaagctgagaaattctataagagagcactagagatgggacatgaaggcctt
atggcaaagagacttgatgcagtatatgaacctggaaacagaggaaagaaatggctcaaa
atcaagccaaccatggaaaaccttgacctcgtgataattggagctgaatggggggagggg
agaagagcacacctatttgggtcgtttatcctgggagcttacgatcctgagaccggggaa
ttccttgaggtcggaaaagtcggaagtggattcacagacgacgacttagttgagtttaca
aagatgttaaagcccttaatagttaaggaagaaggaaagagagtggttatacaaccaaag
atcgttatagaagtaacgtaccaggaaatccaaaagagtcctaagtacaggagcggattt
gccttaagatttccaaggtatgttgcactaagagatgacaagggacctgaggatgcagac
acgatagaaaggatagcccaactctatgaactgcaggaaaggattaagggaaaagtttaa
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