Paraburkholderia hospita: C2L64_01780
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Entry
C2L64_01780 CDS
T05305
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
phs
Paraburkholderia hospita
Pathway
phs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C2L64_01780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phs03400
]
C2L64_01780
Enzymes [BR:
phs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C2L64_01780
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C2L64_01780
DNA repair and recombination proteins [BR:
phs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C2L64_01780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
RNHCP
Motif
Other DBs
NCBI-ProteinID:
AUT67213
UniProt:
A0A1H6I8T2
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All DBs
Position
1:402326..403156
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AA seq
276 aa
AA seq
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MPELPEVEVTRRGIEPYVAGHRVKRVEVRTLALRWPIPPGFARLLQGRLVHKVARRGKYL
LFEIDEGWFIVHLGMTGTLRVLRNVPHPPAAAKHDHVDWIFDDFILRFRDPRRFGAVLWH
TRSAGDVLEHPLLVDLGVEPFAPSFSGALLHRKTRGRKISVKQALLAGDIVVGVGNIYAS
ESLFRAGIRPTTAAGRISLVRYGLLADAVRVTLAAAIEKGGSTLRDFVGSNGESGYFQLD
YFVYDRAGLPCRVCGTPIKQIVQGQRSTYYCPTCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttaccagaagtcgaggttacccgacgcggaatcgaaccgtacgttgctgga
caccgtgtcaagcgcgtcgaggtccgcacgctcgcgttgcgctggccgattccacccggt
ttcgcgcgtttgctgcagggccggctggttcacaaagtggcgcggcgcggcaagtatctg
ctgtttgagatcgacgaaggctggttcatcgtgcatctcggcatgacggggacgctcagg
gtcctgcgtaacgtgccgcatccgccggccgctgcgaagcacgatcacgtcgactggatt
ttcgacgacttcattttgcgcttccgcgatccgcgccgctttggcgctgtgttatggcac
acgcgctcggcgggcgacgtgctcgaacatccgctgctggtggacctcggagtcgagccg
ttcgcgccgtcgttctccggcgcgctgctgcatcgaaagacgcgcggacggaagatttcg
gtgaagcaggcgctgctcgcaggcgatatcgtcgtcggtgtgggcaacatttacgcatct
gaaagcctctttcgcgcgggtatccggccgaccacggccgccggccgcatctcgctcgta
cgttacggtctgcttgcagacgccgtgcgcgtcacgcttgccgccgcgatcgagaagggc
ggcagcacgttgcgcgatttcgtcggcagcaacggcgagagcggctacttccagctcgac
tatttcgtctatgatcgcgcgggtctgccatgccgcgtgtgcggcacgccgatcaaacag
atcgtgcaggggcaacgctccacttactattgtccgacctgtcagcgctga
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