KEGG   Pseudomonas hamedanensis: HU739_007090
Entry
HU739_007090      CDS       T07661                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
phv  Pseudomonas hamedanensis
Pathway
phv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:phv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU739_007090 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:phv03400]
    HU739_007090 (ligD)
Enzymes [BR:phv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU739_007090 (ligD)
DNA repair and recombination proteins [BR:phv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU739_007090 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QXI18759
UniProt: A0A9E6P2A4
LinkDB
Position
complement(1657396..1660017)
AA seq 873 aa
MNSNLDDYNRMRDFSATSEPAAVKRPGRRAAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLAGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSAPAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
PESSLLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLHAKSAA
VVNPPSGFEAKGVHWLKPRLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKSAKGGTTKTAAKKPAKKAAASKAETAPSQSGLAGGKVRITHPDRVIDAVSGTT
KMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKDLTG
QPVMLINNAEALIGAVQMSTVELHTWNGTTVDLDKPDRFVLDLDPDPALPWKSMVEATAL
TLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRFSAVS
GPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPVFREEVAEIKGGNHWNIHNVH
ERLAEVGEEPWADLKKTRQTITAEMRKRVGLKK
NT seq 2622 nt   +upstreamnt  +downstreamnt
atgaacagcaacctcgacgattacaaccgtatgcgcgatttttcggcgacttcggaaccg
gcggcggtcaagcgccccggtcgcagggccgccaaagaccatgccttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgtctggagcttgatggcgccctc
aagagctgggcggtgccgaaagggccttcactggaccccaaggtcaagcgcctggcgatt
cacgtcgaggatcatccactggattacgccacgttcgagggcagcattcccgaggggcac
tatggcgccggtgacgtgattgtctgggatcgcggtgtatggattcctctcgaggatccg
cacaaggcctacgccaagggccggctcaagttcgaattgcagggcgagaaactggccggg
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagagcagtggttcctgatcaag
catcaggacaacgccgcgcgcccgcaggatgacttcgacgtattggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggtaaatctgcgcccgccgccgataaggccaaa
ccggtgaagaaggccccggccaagccgcgcaagcaagcgtccggccagctcaccggtgcg
cgcaaggccaagctgccggcgctgatcaagccggaactggcgaccctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaaatttgacggctaccggatcatggcgcggatc
gaccacgatgaggttcagctgttcacccgcaacggccatgactggacgcacaaactgccg
caacaggccaaggccctggccgcgttgggtctggagtcggcctggctcgacggcgaaatg
gtcgtcgccaacgagcagggcgtgccggattttcaggccctgcaaaacgccttcgatgcc
ggacgcagtggcaacatcgtttattacctgttcgacgtgccgtatctcaacggcgttgac
ctgcgcgacgtgccggtcgaagagcgtcgcgccgcgctgagcaccatcctcggcgctcag
ccagaatcctcgctgctgcgcttttccgaagccttcgaagaaactcctgatgcgctgctc
aatagcgcttgccagatgcagatggaaggtctgatcggcaaacgcctcggctcgccctac
gtgtcgcggcgcagcggtgactggatcaagctcaagtgcaaacatcgccaggagttcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgcgttcggggccctgctgcttggc
ttgcatgaccgtgacagtggcgagttgcgctacgccggcaaggtcggcaccggcttcaac
gaaaccacgttgaaaagcatcctcgcccagctcaaaccgttgcacgccaaaagcgccgcg
gtggtcaacccgcccagcggtttcgaggccaaaggcgtgcactggctgaaacccaggtta
ctggccgaagtggcgttcgcggaaatgaccaaggacggctcggtgcgccacgccgtattc
catggattgcgcgacgacaagccggccaaggacattacagaggagcgagcgaagcctgtg
aaagctgccaaatctgaaaaatccgcaaagggcggaacaaccaaaaccgccgcgaagaaa
ccggcaaagaaagccgctgccagcaaagccgaaaccgcgccgtcgcaatcggggctggcc
ggcggcaaggtgcgcatcacccacccggatcgggtaatcgacgcggtcagcggcaccacc
aaaatgcaactggcgcagtattacgccagcgttgccgaatatatcctgccgcaactcaag
gatcgccccgtggcgctggtgcgtgcgccggatggcatcgctggcgaactgttcttccag
aagaacgccgaacgcctggcgatccccggcatcacttcgctggacaaggacctcaccggc
cagcccgtaatgctgatcaacaatgccgaggcgctgattggtgcggtgcagatgagtacg
gtcgaattgcacacctggaacggcacgaccgtcgacctggacaagcctgatcgctttgtc
ctcgaccttgacccggacccggcgttgccgtggaaaagcatggtcgaagccaccgcgctg
actctcaccgtgctggacgaattgggcctcaaggcctttctgaaaaccagcggcggcaag
ggcatccacctggtggtgccgctgacccgcaagcacggctgggacgaagtgaaggacttc
agccacgccattgtcagccacatggccaagctgttgccggaccgtttttctgcggtgtcc
gggccgaaaaaccgcgtagggcggatcttcatcgattacctgcgcaacggtctgggcgcc
accactatttgtgcctacgcggcgcgcgcgcgcgaaggcatgccggtgtccgtgccggtg
tttcgcgaggaagtcgccgagatcaagggcggcaatcactggaacatccacaacgtccat
gagcgcctggccgaggtcggcgaggagccttgggcggacctgaagaaaacccgacagacc
attaccgcagaaatgcgtaaacgcgtcggcctgaaaaaatga

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