Pseudomonas hamedanensis: HU739_007090
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Entry
HU739_007090 CDS
T07661
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
phv
Pseudomonas hamedanensis
Pathway
phv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU739_007090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phv03400
]
HU739_007090 (ligD)
Enzymes [BR:
phv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU739_007090 (ligD)
DNA repair and recombination proteins [BR:
phv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU739_007090 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXI18759
UniProt:
A0A9E6P2A4
LinkDB
All DBs
Position
complement(1657396..1660017)
Genome browser
AA seq
873 aa
AA seq
DB search
MNSNLDDYNRMRDFSATSEPAAVKRPGRRAAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPKVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLAGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSAPAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
PESSLLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLHAKSAA
VVNPPSGFEAKGVHWLKPRLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKSAKGGTTKTAAKKPAKKAAASKAETAPSQSGLAGGKVRITHPDRVIDAVSGTT
KMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKDLTG
QPVMLINNAEALIGAVQMSTVELHTWNGTTVDLDKPDRFVLDLDPDPALPWKSMVEATAL
TLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRFSAVS
GPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPVFREEVAEIKGGNHWNIHNVH
ERLAEVGEEPWADLKKTRQTITAEMRKRVGLKK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaacctcgacgattacaaccgtatgcgcgatttttcggcgacttcggaaccg
gcggcggtcaagcgccccggtcgcagggccgccaaagaccatgccttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgtctggagcttgatggcgccctc
aagagctgggcggtgccgaaagggccttcactggaccccaaggtcaagcgcctggcgatt
cacgtcgaggatcatccactggattacgccacgttcgagggcagcattcccgaggggcac
tatggcgccggtgacgtgattgtctgggatcgcggtgtatggattcctctcgaggatccg
cacaaggcctacgccaagggccggctcaagttcgaattgcagggcgagaaactggccggg
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagagcagtggttcctgatcaag
catcaggacaacgccgcgcgcccgcaggatgacttcgacgtattggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggtaaatctgcgcccgccgccgataaggccaaa
ccggtgaagaaggccccggccaagccgcgcaagcaagcgtccggccagctcaccggtgcg
cgcaaggccaagctgccggcgctgatcaagccggaactggcgaccctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaaatttgacggctaccggatcatggcgcggatc
gaccacgatgaggttcagctgttcacccgcaacggccatgactggacgcacaaactgccg
caacaggccaaggccctggccgcgttgggtctggagtcggcctggctcgacggcgaaatg
gtcgtcgccaacgagcagggcgtgccggattttcaggccctgcaaaacgccttcgatgcc
ggacgcagtggcaacatcgtttattacctgttcgacgtgccgtatctcaacggcgttgac
ctgcgcgacgtgccggtcgaagagcgtcgcgccgcgctgagcaccatcctcggcgctcag
ccagaatcctcgctgctgcgcttttccgaagccttcgaagaaactcctgatgcgctgctc
aatagcgcttgccagatgcagatggaaggtctgatcggcaaacgcctcggctcgccctac
gtgtcgcggcgcagcggtgactggatcaagctcaagtgcaaacatcgccaggagttcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgcgttcggggccctgctgcttggc
ttgcatgaccgtgacagtggcgagttgcgctacgccggcaaggtcggcaccggcttcaac
gaaaccacgttgaaaagcatcctcgcccagctcaaaccgttgcacgccaaaagcgccgcg
gtggtcaacccgcccagcggtttcgaggccaaaggcgtgcactggctgaaacccaggtta
ctggccgaagtggcgttcgcggaaatgaccaaggacggctcggtgcgccacgccgtattc
catggattgcgcgacgacaagccggccaaggacattacagaggagcgagcgaagcctgtg
aaagctgccaaatctgaaaaatccgcaaagggcggaacaaccaaaaccgccgcgaagaaa
ccggcaaagaaagccgctgccagcaaagccgaaaccgcgccgtcgcaatcggggctggcc
ggcggcaaggtgcgcatcacccacccggatcgggtaatcgacgcggtcagcggcaccacc
aaaatgcaactggcgcagtattacgccagcgttgccgaatatatcctgccgcaactcaag
gatcgccccgtggcgctggtgcgtgcgccggatggcatcgctggcgaactgttcttccag
aagaacgccgaacgcctggcgatccccggcatcacttcgctggacaaggacctcaccggc
cagcccgtaatgctgatcaacaatgccgaggcgctgattggtgcggtgcagatgagtacg
gtcgaattgcacacctggaacggcacgaccgtcgacctggacaagcctgatcgctttgtc
ctcgaccttgacccggacccggcgttgccgtggaaaagcatggtcgaagccaccgcgctg
actctcaccgtgctggacgaattgggcctcaaggcctttctgaaaaccagcggcggcaag
ggcatccacctggtggtgccgctgacccgcaagcacggctgggacgaagtgaaggacttc
agccacgccattgtcagccacatggccaagctgttgccggaccgtttttctgcggtgtcc
gggccgaaaaaccgcgtagggcggatcttcatcgattacctgcgcaacggtctgggcgcc
accactatttgtgcctacgcggcgcgcgcgcgcgaaggcatgccggtgtccgtgccggtg
tttcgcgaggaagtcgccgagatcaagggcggcaatcactggaacatccacaacgtccat
gagcgcctggccgaggtcggcgaggagccttgggcggacctgaagaaaacccgacagacc
attaccgcagaaatgcgtaaacgcgtcggcctgaaaaaatga
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