Pangasianodon hypophthalmus (striped catfish): 113526022
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Entry
113526022 CDS
T05759
Symbol
lmo7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
113526022 (lmo7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113526022 (lmo7)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
113526022 (lmo7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF4757
PDZ
PDZ_6
LIM
PDZ_2
DUF6288
Motif
Other DBs
NCBI-GeneID:
113526022
NCBI-ProteinID:
XP_026768559
LinkDB
All DBs
Position
Unknown
AA seq
1699 aa
AA seq
DB search
MMSENKDYRRSLVVTPKTSTQFNQFLPSKDKQSGYVPAPLRKKRADTRNDENRRSWASPM
FTEEDGSFSRIGTGSSSTNELGIQTSTQAAWPFGYESSDSEADRPDPDLLLDDLASRRFH
TPSVVTPTNFALPVTSGESTTMPQTTRPKVMVTNVPQPTLTYLSSEARPPQKAARRSASA
DVYMYDDSEEEDDEIGYADPVHDDLYARKVGLTVVQPISTVHYDKFLPKFWTPEEDMHVQ
KIRMGSQRRPWYRKIQGFSQKKSGSSSEDSDCDVSPQLCVSSPSHSEPPSSHAQTSAQLS
PITPSPTTQPLILTQQTSGAQRFQLPDFWPRPDPTSGPRLIKCKRHPLLGREHPNDPYNV
SDDILPDLENDDMFSRRTYAFHSNTELARMKYGGLLTSHHRSEPSIRVVTQHSDAKSTYP
DIEKDDVVTRRLQHQSTLRPLSGAPNNYHPVPIPEPWALPQKLQAKISAPCPPIQVPAQV
RAKQKGDANRKIDDMLVRKLGIVHVQNPTEVSQRSVGTQTGPSVPSCSEEDLQKWQAIRE
ASRLRYKKRLMVERLLQKNSDSDGSKSLSDIPVEQTVQKVQYEDLQKIRAQVKENEDKWQ
DDLTKWKNRRRSVNSDIVKKKEEREQIEILSSGSSTRKSKTFKEMEEERESREPGFKSRF
ATFSTSEDQDVFDEPTPKTRVLPTRSYTVDNPYSLNRSKVRSLPSLLDDAPEAGSLPSND
VDAPSSPIQSNLGTTLHTSQGKQTSISSSHSLLDDPVPTSVTSKPTLLEPTSTTQSRGTS
TIFSSPPLEANNSLKPITKSSNSVNPVPAPRQNQSQTSLYKPVSTETKQPIAPRVSASLP
RSYQRSDSARITSVVTPRPFGVPSTKVASLPRTYMVDESQKRFNGETSGSKHNTAPSRYA
AFVKEDDINSQTSSVQSSNEDEGDEEEQVFPPTQTSTSVTPVSRVAPQPIAVSPVNSTQQ
ESYSEMRISLNQKPNSSHDFGFQTNWDSTGAAVKSIQRGSPAELCHLQVGDKILAVNGQK
VADMSYEQWKRSMDEALQEGSLFMDIRRQGKSNWGKDLPSLPFKSHKVINLTSADPLGSP
EPYANVSLDFTSYPAMDSTVKTLNSSSQPVNSLPSNGINGGIREEPVILRNKESLSLKNL
KRRSEFFEQGGSENQISDLPVPSLSASSTRWSWDPEEERRRQEKWQKEQERQLQEKYQRD
QEKLEEEFRKAQQEALVEGTKQYQEEMRSLELAQEASRLALKEEEERRRKEEERKRRDEQ
ERLEEERKRKEQQERLEEERKRKEQQERLEEERKRREQQERLEEERKRREEQERLEEERK
RREQQERLEEERRRREEQKKREEQKRLEEERKKEEEELKRREEEKRRREEEVQRLQRKRE
EEEERRRQEAQRRLQANDVEYTFPELSYSHRAKSKSTPELDDKESTDIKGVYSKHRGLAG
WLLEEELRRKKDPHILRQQAASELELERRNILSAMRYSNPERAVSSGLGERSLSKNKNEP
VSQAEAERQQIIQDMKKKTALLTDNSWIRQSPTTSMNKQPVNLPMRRGESLDNLDMTTNR
PSWRSSWTPGTTSSIPDYSRPYSSLAGSSSSYQSLNSHRPSLPQFTSTTATNPESQPSSR
NRSVSGKKMCTYCDMPLGKGAAMIIESLGLCYHLQCFKCIQCKIDLGGSESGAEVRIRNK
QLFCNSCYMRVKTGQPTAM
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcagaaaacaaggactatcgccgctcactggtggtcactccaaagaccagcact
cagttcaaccagttcctgccaagcaaagacaagcagtcaggctacgttccagcaccacta
cgcaagaagcgtgctgacactcgcaatgatgaaaacagacgcagctgggccagtcccatg
tttacagaggaggatggatctttctctaggataggcacaggctcgtcctccaccaatgaa
ctaggcattcaaacttctacgcaagctgcctggccattcgggtatgagagcagtgattca
gaggcagaccgtccggaccctgacctgctccttgatgatttggccagccgccggtttcac
accccctctgtcgtcacacccaccaactttgcattacccgtgacctcaggggaatccacc
actatgccccaaaccaccagaccaaaggtcatggttactaatgtgccccaaccaacgttg
acctatctcagcagtgaagctaggcctcctcagaaggctgctaggaggtctgcatctgct
gatgtctacatgtatgatgactcggaggaagaagatgatgagattggttatgctgatcct
gttcatgatgacctttatgctcgtaaagtgggcctgacagtagtccagcccatttccact
gtgcactatgataaatttctcccaaagttctggacaccggaggaagacatgcacgtgcag
aaaatcagaatgggctcacagcgtcggccctggtacagaaagatccagggcttcagccag
aagaagtctggctcatcctcagaggactccgactgtgatgtcagtccccagctctgtgtg
tcctctccctctcattctgaacccccttcctcacacgcacaaacttcagcacaactcagt
cccatcactcccagtcctaccacacagccactcatcctcactcaacagacctctggagcc
caaaggtttcagctccctgatttctggcccaggccagaccccacctcaggtccaagactg
attaagtgcaaaagacatccactattagggcgggagcaccctaacgacccctacaatgta
tctgatgacattctccctgacttggaaaatgatgacatgtttagccgccgcacatatgcc
ttccactctaacactgagctggccaggatgaaatatgggggtctgcttacctcacatcac
aggtctgagccgtctatcagagtggtcactcagcacagcgatgccaaatctacttaccct
gacattgagaaagacgatgtggtcacccgcaggttacagcatcagtctacactgcgcccc
ctttcaggagcacctaataactatcaccctgtgcctattcctgagccctgggccctgcca
cagaaacttcaggccaagatatctgccccgtgccccccaatacaggtgcctgctcaggtg
cgtgcgaaacagaagggggacgcaaaccgaaaaatagatgatatgctagttaggaagctt
ggaattgtgcatgtccagaatcccactgaggtatctcagagatcagttggaactcaaaca
ggcccgagtgtgccatcctgcagtgaggaggatctccaaaaatggcaggccatcagagag
gccagtcgcctaagatataagaagaggctgatggtggagagactgttgcaaaagaactca
gatagtgacgggtctaaatcattgagtgacatccctgttgagcagacagtccaaaaggtt
caatatgaggatctgcagaagattcgtgcgcaggtgaaggagaatgaagacaagtggcag
gatgatctcactaaatggaaaaacaggcgcaggagtgttaactcagatatcgtgaagaag
aaggaagagagagagcagattgagatacttagttcaggcagcagcacccggaaatcaaag
accttcaaggaaatggaagaggagagggaaagccgagagccaggcttcaagagtcgcttc
gctaccttctccacttctgaagaccaggatgtctttgatgaaccaacacccaagaccagg
gttttaccaacacgcagctataccgtcgataatccctactccctgaaccgatctaaagtg
cgctctctgcccagtttgctagatgatgcaccagaggctggcagtctgccatcaaatgat
gtagatgctccatccagtcccatccagtccaacttagggaccactctacatacaagtcaa
ggaaaacaaactagcatctccagcagccatagccttctggatgatccagttcctactagt
gtcaccagcaaacccactctactagagcccaccagcaccactcagtcaaggggcaccagc
accatcttcagcagtcctccactggaggccaacaacagcttaaaaccaattacaaaatcc
agcaactctgttaaccctgtgcctgcacctaggcaaaaccaaagccagacttccttgtat
aaaccagtttcaacagaaacaaagcaacccattgcacctcgggtttctgcctcactcccc
aggagctaccagagatcagatagtgcacggatcacttctgtcgtcactcctagacctttt
ggtgtcccaagcaccaaagttgcctccctgccccgtacctatatggtggacgaatctcag
aagcgctttaatggtgagacaagcggtagtaagcataatacagcacctagccgttatgca
gcatttgtgaaagaagatgacattaattcccagaccagttctgtacaaagcagtaatgag
gatgaaggggatgaagaggagcaagtttttccccctactcagacctccacatctgtgact
ccagtcagtcgtgtagctccacaacccatagcagtgtctcctgtcaacagcacacagcag
gaaagctacagtgaaatgaggatcagcctgaaccagaaacccaacagcagtcatgacttt
ggcttccagactaactgggactccacaggggccgctgtcaaatctatacaacgaggcagt
ccggcagagctgtgccacctgcaggttggggataagatcttggcagttaatgggcagaag
gtggcagacatgagctatgagcagtggaaaaggagcatggatgaagccctgcaggagggt
agcctgtttatggacatccgcagacagggaaagagcaattggggaaaagacctaccttcc
cttccatttaaaagccataaggtcatcaatctcaccagtgcggatcctctaggttcccct
gagccatatgccaacgtgagcctggacttcacttcatacccagccatggattccactgtg
aaaactctgaattccagctcccagcctgtcaatagtctgccttccaatggcattaatggt
ggaattcgtgaggaacctgtgattctgagaaacaaagaatccctttctttaaaaaacctt
aaaaggagatcggagttttttgaacaaggtggatctgaaaatcaaatatcagatcttcca
gttccctctctctcagcctcctctactcgctggtcctgggaccccgaggaggagcgcagg
cgacaggagaaatggcaaaaagagcaggagcgccagctccaggaaaaatatcaacgagat
caagaaaagctggaggaggagtttagaaaagcccagcaagaggctctagtggaaggcaca
aaacaatatcaagaggagatgaggagccttgagctggcgcaggaggcctcaagactggcc
ctcaaagaggaagaggagaggaggaggaaagaggaggagaggaaaagaagggatgaacag
gagcgccttgaggaagagaggaaaagaaaggagcaacaggagcgccttgaggaagagagg
aaaagaaaggagcaacaggagcgccttgaggaggagagaaagagaagggagcaacaggag
cgccttgaggaggagaggaagagaagggaggaacaggaacgccttgaggaggagaggaag
agaagggagcaacaggagcgccttgaggaggaaaggagaagaagagaagagcagaaaaag
agggaagaacagaaacgactggaagaggagagaaagaaggaagaagaggagcttaaacga
agggaggaggaaaagagaaggagagaggaagaggtacagagactgcagaggaaaagagaa
gaagaggaggagaggaggcgccaagaggcccagcggagacttcaggcaaatgatgtggag
tatactttccctgagctatcctactcacacagggccaagtccaaatctactccagagctg
gatgacaaagaaagtactgatattaaaggtgtgtatagcaagcacaggggcctggcaggt
tggcttctggaggaagagttacgaaggaagaaagatccccatatcctgagacagcaggct
gcatctgagctggaactagagaggagaaacatccttagtgctatgagatacagtaatcca
gagagagctgtaagcagtggtctgggtgagagatctctgagtaagaataagaatgagccg
gtatctcaggctgaagcagaaaggcagcagatcattcaggacatgaagaagaagactgca
ttgttgacagacaacagctggatccgtcaaagtcctaccaccagtatgaacaaacagcca
gtcaaccttcccatgaggagaggtgagtctctggataacctggacatgacaacaaaccgc
ccttcctggaggtcatcatggactccgggcaccacttcctccatcccagactatagccgt
ccttattcctctctcgctggctcttcttcttcatatcaatctctgaactcccatagacca
tcattgccccagttcacatccaccaccgccacaaatcccgagtctcagccatcctcacga
aacaggtcagtcagtggcaagaaaatgtgtacttactgtgatatgccactgggcaaagga
gcagcaatgatcatcgagtccctggggctatgttatcatttgcaatgctttaagtgcatt
cagtgcaaaattgaccttggcggctcagaaagtggagctgaagtcaggatacgaaacaaa
cagctcttctgtaactcctgctatatgcgagtcaaaacagggcagccaactgccatgtga
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integrated database retrieval system
