Pangasianodon hypophthalmus (striped catfish): 113526303
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Entry
113526303 CDS
T05759
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
113526303
NCBI-ProteinID:
XP_026769035
LinkDB
All DBs
Position
Unknown
AA seq
717 aa
AA seq
DB search
MAVAPFLVILVQVVLLPSVFGGAYYGHKPHHQQHQPVPLIPHKGIGKEMPHMQYPHYRKE
MPQLPMHMNKGKDKKGETIPRGEQGIPGEAGPQGPPGPQGPPGPPGPQGNGMPGPPGNPG
SPGPPGLPGVGKPGMPGMPGRPGDKGPTGEQGEQGPIGAEGLPGMTGPPGPPGPPGLPGI
GKPGGQGLPGMTGPKGEPGHKGLPGLPGLPGPKGDKGIGHPGPQGPKGPPGPPGLPGHKG
LPGVGKPGPPGLPGAPGKQGQPGPAGPAGPGGPPGLEGKQGPQGLPGIGKPGEGGLPGQP
GVPGHKGLPGPPGLPGKPGLPGFGKPGYPGPKGDKGMGGPPGPSGPKGDKGSEGPPGLVG
PSGPSGPPGPPGPVGLPGGIGAPGPKGEGGESGAKGEPGPVGEPGPPGIAGQPGQAGEDG
EPGPRGPPGPIGPKGDGGEKGLPGSPGPPGVPGLKGEGGAPGPEGPQGPKGIPGLAGPGG
PIGPPGAPGPKGEAGPPGQAGPPGEGSAGSTGPLGPPGPPGPSGSPGQPGLPGPPGPPGP
PGSPALNPDLMGVLPEMGPALDGVKASGYMKGKYGGGADIMGSSGLEMPAFTAQLTTPYP
PVGTPVIFDKLLYNGRQNYNPQTGVFTCDLPGIYYFSYHVHCKGSNVWVGLYRNGEPVMY
TYDEYKKGVLDQASGSAVVPLQPGDTVHIQLPSDQASGLYAGQYVHSSFSGFLLYPM
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggctcctttcctggtgattttagtacaagtggtattattaccatctgttttt
ggaggagcatattatgggcacaaaccacatcatcaacagcaccagcctgtacctcttata
cctcacaaaggtataggaaaagagatgcctcatatgcagtatccacattacaggaaagaa
atgccacaattacccatgcatatgaacaaaggcaaggacaaaaaaggtgagaccatccct
agaggtgagcagggtattccaggtgaagctggaccacaaggaccaccaggaccacaagga
ccaccagggcctcctggtcctcagggaaatggtatgccaggtcctccaggaaatccaggt
tctcctggccctccagggttgcctggtgttggtaaaccaggaatgccaggcatgccaggg
aggcctggtgataagggaccaacaggagaacaaggtgaacagggacctattggagcagag
gggctaccgggcatgacaggaccacctggaccccctggacccccgggcttgccaggaatt
gggaagccaggtggccaaggactaccaggaatgacaggacccaaaggagaaccagggcac
aaaggtctacctggtcttccagggctgcctgggcctaaaggggataagggaatcggacat
cctgggccacaaggtccaaaaggcccacctgggcccccaggactacctgggcataaagga
ttgccaggggtgggtaagcctggaccgcctggtttgccaggagcaccagggaaacaagga
caacctggaccagctggaccagctggtccaggaggtccaccaggtttggagggcaaacaa
ggaccacaaggactgcctggcattgggaaaccaggtgagggaggattgccaggacagcca
ggtgtcccaggccataagggactaccaggaccgccaggtttgccagggaagcctggatta
ccaggatttggaaaaccaggataccctgggccaaagggtgacaaaggaatggggggacca
cccggtccttcaggaccaaaaggtgacaaaggaagcgaaggccctcctggtctggtagga
ccctcaggacccagtggtcctcctggtcctccaggaccagtaggactgcccggcggtatt
ggtgcaccaggacctaaaggagagggaggtgaaagtggagcaaagggggaaccagggcct
gtaggagaaccaggacctccaggaattgcaggccaaccaggtcaagctggtgaggatggt
gagcctgggccacggggaccaccaggacctatcggtcccaaaggagatggaggagagaag
ggtctacctgggtcacctggccctcctggtgtgcctggtcttaaaggagaagggggtgca
cctggtcccgaagggcctcagggtcctaaaggtattccagggcttgcaggaccaggggga
ccaattggaccacctggagccccagggcctaagggagaagctgggcctcctggccaggct
gggcctccaggtgagggaagcgctgggtctacaggccctcttggtcctcctgggcctcct
ggcccaagtggttccccaggccagccaggtctaccaggtcctcctggtcctccaggacct
cctggatcacctgccctaaaccctgacctcatgggtgttctacctgagatggggccagcc
ctggatggagtgaaggctagtgggtatatgaaaggaaagtatggaggtggagctgatata
atgggttctagtggtttagagatgcctgcttttactgcacaactgactacaccataccct
ccagttggcacaccagtgatattcgacaagctattgtataatggccgacagaactacaac
ccacagacaggtgtgttcacctgtgaccttcctggtatctactacttctcataccatgtg
cattgcaagggttccaatgtatgggtgggtctgtaccgaaatggagaacctgtgatgtat
acatatgatgagtacaagaagggtgttttggaccaggcatctggcagtgctgtggttccg
ttacagccaggagatactgttcacatccagttaccatctgaccaggcatctggactctat
gcagggcaatatgtccactcttctttctctggtttcctactctaccccatgtag
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