Pangasianodon hypophthalmus (striped catfish): 113528431
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Entry
113528431 CDS
T05759
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03013
Nucleocytoplasmic transport
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113528431 (casc3)
03015 mRNA surveillance pathway
113528431 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113528431 (casc3)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113528431 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
113528431
NCBI-ProteinID:
XP_026772764
LinkDB
All DBs
Position
Unknown
AA seq
742 aa
AA seq
DB search
MADRRRRRRRASQDSEDEDESASGSESGRSASPSGKSRARIPEPGESPAARVGAKSDVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGGEDEEEEGEHFSDDDAARPAAEQKATADVP
AEGLGEEEEEEEEEEEEERDIKEVKADEKGNLAGERQSGDGQESTDDPENKSASKAGQKL
DDDEDRKNPAYIPRKGLFFEHDVRGQAQDEERPKGRHRKLWKDEGRWEHDKFREEEQAPK
SREELIAVYGYDIRNGNGPSDTRPFKPRKPRHPGPLNQESKRYRDGEKPPRSSWHGAAPS
ARGAPLVTVTSQSGVPAAPRPQNRPSTQPPARTFQSSRRPEIRSHPKATTRPQAPESERA
PRLRGRGSHGPSHHAQRSPQEDDEEEGEIPTVATTYTAHYYKTEQETTSSSQQKEECGTM
EEQQSSTPGTVREVSPPPERPVEKKSYSLARRSRARPLDLSKQASLEEAVITPQVMPTAA
KTESWQGQGETGTQSGLSRLDQDLARLNLAGQNWTQSPTSYLRPEMRGIPSSIHMGGGPP
QYGNMEDMGVGGGRAKRYSSQRQRPVPEPAPMHIGLMEGHYYEPMSFQGPIYTHGDSPAP
MPPQGLLVQPEMHLPHPTHPGLHPHQSGGPIPNAALYAAPPVSLSPGQPPPQQLLAPPFY
PPPGVMTFSNTNYPYPAGATLPPMYPNAQAQSQVYGGVTYFDTVQQQAQPKPSPPRRTSQ
PVTVKPPPPEDQSRKPSEEVRS
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacgacgaaggaggcgcgcgtctcaggacagcgaggatgaggacgag
tctgcgtccgggtcggagagcgggagatcggcttcccccagcgggaagagccgcgctaga
atccccgagccgggagagtctccagccgcgcgcgttggcgcgaaaagcgacgtcgaatcc
gagtgtgaaagtgaagatggtgtaggtgaagctgtcctttctgactacgacagtgctgat
ccggaggagaacggctcgcactcggagggaggagaggacgaggaggaggagggtgaacac
ttcagtgatgacgacgctgctcgcccagccgcagaacagaaagcaacagccgatgttcct
gctgaaggtttgggagaggaggaggaagaggaagaagaagaagaggaggaggagagagac
ataaaagaagtgaaagctgatgaaaagggcaacttggcaggggagaggcagagtggagat
ggtcaggagagcacagatgatcctgagaacaagtcagctagtaaagctggtcagaagttg
gatgatgatgaagaccggaagaatccagcatatatcccccggaagggcctgttttttgag
catgatgtgagaggccaggctcaggatgaagagaggcctaagggcagacataggaagtta
tggaaagatgagggtcgctgggagcacgataagttccgggaggaggaacaggcccctaaa
tcacgcgaggagctgattgctgtttacggttacgacattcgtaacggcaatggccccagt
gacaccagaccattcaagccacgaaagcccaggcatcctggcccgctaaaccaagagtcc
aagcgttacagggatggtgagaagcccccccgctcctcatggcatggtgcggctcccagt
gcccgtggtgccccccttgtgacagtaacttcccagtcaggtgttcctgctgctcctcgc
ccccagaataggccctccacccagccccctgcacgcaccttccagagcagccgtcggcct
gaaatcagaagtcatcctaaggccaccacgcgaccccaggctcctgagagtgagagggca
cccaggctcaggggccgaggttctcatggaccatctcaccatgcccagcgcagcccacaa
gaggatgacgaagaggaaggcgagattcccactgtagccaccacttacactgcccattat
tacaaaactgaacaggagacaacctcttcatcgcagcaaaaggaggagtgtggaacaatg
gaggagcagcagtcgagcacacctggcacagtaagagaggtgtctccacctcctgagagg
ccagtggagaaaaaatcctactctctggcacgtaggagccgagccaggcccttggacctt
agcaagcaggcctctctggaagaggcagtgatcaccccacaggttatgcccactgctgcc
aagactgaatcatggcagggacagggtgagacgggcacacagagtggcctgtcaaggctc
gatcaggatctggctcgtctcaatctggctgggcaaaactggacccagagtccaacctca
taccttcggcctgagatgaggggcatccctagttctatacatatgggaggtggtcctcct
caatatggcaatatggaggacatgggtgttggtggtggccgggctaagcggtattcgtct
cagaggcagaggccagtgcctgaaccagcgccaatgcacatagggctcatggagggccac
tattacgaacccatgtcattccaaggaccaatctacacacatggcgacagtcctgctccc
atgccaccacaggggctgttggtacaaccagagatgcacctgccccaccccacgcacccc
ggcttgcatccacaccagtcaggaggaccgattccgaacgctgcgctttatgctgctcca
cccgtttctttgtctcctggacagccacccccacagcaactgctagccccacccttctac
cctccacctggagtcatgacatttagcaacaccaactacccttaccctgctggagctaca
ctaccccccatgtaccccaatgcacaggctcagtcacaggtgtatggtggagtgacgtat
tttgacacagtacagcagcaggctcaacccaaaccttctccaccacgccgcacttcacag
ccagtcacagtcaaacctcccccaccagaggaccagagcaggaagcccagtgaggaggtg
cgctcctag
DBGET
integrated database retrieval system
