Pangasianodon hypophthalmus (striped catfish): 113533866
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Entry
113533866 CDS
T05759
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113533866 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phyp01009
]
113533866 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113533866 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
phyp03029
]
113533866 (rb1cc1)
Protein phosphatases and associated proteins [BR:
phyp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113533866 (rb1cc1)
Membrane trafficking [BR:
phyp04131
]
Autophagy
Autophagosome formation proteins
ULK complex
113533866 (rb1cc1)
Mitochondrial biogenesis [BR:
phyp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
113533866 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
DUF3020
ubiquitin
Motif
Other DBs
NCBI-GeneID:
113533866
NCBI-ProteinID:
XP_026782089
LinkDB
All DBs
Position
Unknown
AA seq
1590 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTTSYQKLLSKFDIAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKSSSPHPRAEDEPDNKEGGQTS
SQSAILCPAEVQRNQKSPVSGDSPAQDRVRSSSSGLQEAMEEEKEQEGTEKTDAPSFNVT
LLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLVECRDTITKLDNQNMKAIKGLED
RLYALDQMIASCKKLVNEQKELAQGFLANQMRAENLKDNSVLPDLCLSHANQLMIMLTNH
RKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVE
ALSTVPQMYCLAVVEVVRRKMFVKHYREWASALVKDGKNLYEAEKAKRETFGKLFRKSFL
RNRLFRGLDSWPPSSFCTRKPRKFDFELPDISLNDLQYLKSCCPAEVQPFLRVPSLCDFE
PLNHHTEALHQLVQAARSVDEMSQTITDLLSELKVSGSQSAQRPSSESRTETTPTSSKTP
PTLSIPSPPTQPLSLPAPLEDLSPDSIDAHTFDFETIGHPNMDPVLQQGSLDLDSLAESP
ESDFMSAVNEFVIEENVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDTTMLERENS
RIMTLKVTIDKYRSAAEESQSNMRKVKDDLCHFQGLVLKEQRDFGFALKKMSAEIHSIVN
NIRRCQEEDLREAHQNELQTLKDDHEKHILRLTDELEGNHKIVRDVQRAMLELEGLVERK
EKELAQMDGERERLLQEIRNSHQQAVQELERNLAERSKALQDALHSRDALANQLDCLQVE
IERKVRQEMENAEKNRLQDLEARLKKEHQAQMEILKRDNQSALDTLTLENQAKMKELMES
HLTERKERECRFKDYEARISELADARCKLEVEMALKETETEDLRLQYEEAKNQQEEALKA
EMESRTTALQEQVEALKQELQKKNEEHEQGLAELRALMRLEKDHCISELVERHDEESTLL
RHEFSALKQKSQDAEKDCEERLQEIQHQLEDQLKTLRKEREEEQRAFMDKERELQTAISD
LQAVNTLLSGQLEQERQEARRTVEEKEALKEALLQKEEVEARLLGKIKLLETQLEERQST
DKGAEAGEREAVDVALQQRLDEERASLLGKLELLEKKKNEELQNLKTSLIAEQQTNFNTV
LTREKLKKEQIINELSEKLKKVTLQQEKDKSLIETLSEDRATILQEKKHLEEELNRLRSS
TLVSSAFFVPNPITVAVETPGACGPAPAEVPILPALDSERLVSVATLRDDDRVDSAVEAS
MMTVHDNALMLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLAALDLKPATGATRRPWVLGKVMEKEY
CQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtacgtgttccaggtcaataatgggagcacgttgacattcgacaccgaacta
gcggtacaaactgttctggacctcaaacatgcaatccaggctaagtataagatcgccact
cagcatcaggtgctggtggttaatgggggcgagtgtatggtggccgagaggagagtgtgt
agctacagtgcaggcacggatacgaaccccatctttttgttcaacaaagagatgatcttg
tgcgaccgcgcgcccacgatccccaaaaccaccttctccatagagaatgagatggagatg
aaggtggaggagtccctcatgatgccggccgtgtttcacactgtcgcctcgaggacgcag
ctcgccgtggaaatgtttgaagttgccaagaagctatgctctttctgtgagcgcctggtc
cacgatgaacaccttcagcaccagggctgggccgccatcatggccaacctggatgactgc
accacgtcctatcagaagctgctctcgaaattcgacatcgcgtacactaattaccaacag
gattttgaagacatcaaactgaagctaacaaagctcggaacggccgtctcggtcatggct
aaaatccctctgctggagtgcctgacccgccacagctacagagaaagcctggagaaatcc
tcctccccacatcccagagcagaggacgagcctgacaacaaagaaggaggccaaacatcc
tcccagtcggccatcttgtgccctgcggaggtccagcggaaccagaaatctcccgtttca
ggagattccccggctcaggacagagtgaggagcagcagcagcgggctgcaggaggcgatg
gaggaagaaaaggagcaggaggggacagaaaaaacggacgctccctcatttaacgtcacg
ctgctggactggatcaacgtacaggaccggcccaatgatgtcgaggctgtagtgaggaag
tgcttcgactccattaacagactcgatccgcggattattcagccgtttctcgtcgagtgc
cgggacactattaccaaactggataatcaaaacatgaaggccataaaggggctcgaagac
agattgtatgcactcgaccaaatgattgccagctgcaaaaagctagtgaacgaacagaag
gagctcgctcagggatttttagccaatcagatgagggctgaaaacctgaaggacaattca
gtgctgccggacctgtgtctgagtcacgccaatcagctgatgatcatgctgaccaaccac
aggaagctgctggacatcaagcagaagtgcacgactgccaaacaggaactggccaacaac
ctgcaagtccgtctcaaatggtgctgctacgtgatgctgcatgcggatcaggatggcgag
aagctacaagcgctgctgcgcctcctgaccgagctgctggagcgagtgcgtgtggtggag
gccctcagtaccgtcccgcagatgtactgcctggctgtggtggaggtggtgcgcaggaaa
atgtttgttaaacactacagagagtgggccagtgccctggtaaaagatgggaaaaacctc
tatgaggcagagaaggccaaaagggagacgtttggcaagctgttcagaaagtcattcctc
agaaatcgtttgtttcgaggacttgactcatggcctccgtcatcattttgcacaagaaag
cctcgcaagtttgactttgagcttccggatatttccctgaacgacctgcagtatctgaag
agctgctgtcctgctgaagtgcagccttttctcagggttccatcactatgtgattttgag
ccattaaaccatcatacagaagctcttcaccagctagtacaagcagctcggagtgtagac
gagatgtctcaaaccatcacagacttactgagtgaactgaaggtttctgggagccagagt
gcacaaagacctagctcggaaagcagaacagagaccacgcccacctcatccaaaactccg
cccaccctcagtataccgtctccacccactcagccgctctcccttccagctcctttagaa
gatctgtcccctgacagtatagacgcccatacgtttgactttgaaaccataggacatccc
aacatggatcccgtgctccagcagggctctctggacctggactctttagccgagagccct
gagtcagacttcatgtcagcggtcaatgagtttgtcatcgaagagaatgtaacatcaccc
aatcccattagtgaccctacaagtcctgagatgatggttgagtctctttactcctcagtc
atcaatgctatagatagcaaaaggatccaggacacgaccatgctcgagagagagaactcc
agaatcatgaccctcaaggtgaccatagacaagtaccgttctgctgctgaggagtcacag
agcaacatgaggaaagttaaggatgacctctgtcatttccaaggacttgttttgaaagag
cagcgggactttggctttgccttgaagaagatgagtgcagaaattcatagcatagtcaac
aatattagacgatgtcaagaagaggacctcagagaggcacaccagaatgagctccaaacg
ctgaaagatgatcacgaaaagcacatcctccggcttactgacgagttggaagggaaccac
aagatcgtccgggacgtccagagggccatgctcgaactcgaagggcttgtggagaggaaa
gagaaagagctggctcagatggatggtgagagggagcgcttgctgcaggagatacgcaac
agccaccagcaggctgtccaggagttggagaggaaccttgccgagcgcagcaaggcactt
caagacgccctgcattccagagacgcccttgccaaccagctggattgcctgcaagtcgag
atcgagcggaaggtacggcaagaaatggagaatgcagagaagaaccgtctccaagacttg
gaagctcgtttgaaaaaggagcaccaagcacaaatggagatcctgaaacgtgacaaccag
agcgctctagacaccctaacccttgagaaccaagctaaaatgaaagaactcatggaatca
catttgacggaacgaaaggagcgcgagtgccgctttaaggactacgaggcccgcatcagt
gagctcgctgacgcccgatgcaaacttgaagtggaaatggcacttaaagagactgaaacg
gaagacctgcgcttgcaatacgaggaagccaagaaccagcaggaggaggcccttaaggca
gagatggagtcacggacaacggccctccaagagcaagtcgaggcactgaagcaagagctg
cagaagaagaatgaggagcatgagcaaggcctcgccgagctgcgcgctctcatgcgcctc
gagaaggaccactgcatctcagagctggtggagcggcacgatgaggagagcacgctcctg
cgccatgagttctccgcactcaagcagaagtctcaggacgctgagaaggactgtgaggaa
cgcctgcaggagatccagcaccagctggaggaccagctcaaaactttacgcaaggaacgg
gaggaggagcagagggctttcatggataaagagcgcgagttgcaaaccgccatcagcgac
ctgcaggctgtaaacacgctcctgtcagggcagctggagcaggagcgtcaggaagcccgg
agaacggtggaggagaaagaggcactgaaagaagccttattgcagaaggaggaggtggaa
gcgaggctgttaggaaaaattaaactacttgaaactcaacttgaggaaagacaatccaca
gacaaaggagctgaggctggggaaagagaagctgtggacgtcgcattgcagcagaggttg
gatgaagaaagagcgtctctcctgggcaagttggagctgctggagaagaagaagaacgag
gagctgcagaacctgaagacctcactgatcgctgagcagcagaccaatttcaatactgta
ctgacacgggagaagttaaagaaggagcagatcatcaatgagctaagtgagaagctgaag
aaggtgacgctacagcaggagaaggataagagcctgatcgagactctctctgaggaccgc
gccaccatcctgcaggagaaaaaacacctagaggaggagctcaaccgcctccggagctcc
accctcgtctcctctgctttctttgtgcccaatcccatcaccgttgccgtggagacgccc
ggagcgtgtgggcccgcccccgccgaagtccctatcctgcctgcgctggattcggagagg
ctggtgtctgtggccacgctgcgagacgatgacagagtggactctgccgtcgaagcgagc
atgatgactgtccatgataacgcgttgatgctgtcagaggagaagcagcggatactgatg
ttggaaagaaccttacacatgaaagaagaggagaacaagaggctgagccaaagactgatg
tcgcagagcatgtcctctgtgtcctcaaggcattcggagaagatcgccattcgagatttt
caggttggcgatttggtcctcataatcctggatgagcggcacgataattacgtgctgttc
acggtcggccccactctctacttcctgcactcagaatctctcgctgcgctggacctcaag
ccggcaactggagctacgaggcgaccgtgggtgctggggaaggtcatggagaaagaatat
tgccaggcaaaaaaggcccaaaaccgcttcaaagttcctttgggcaccaaattctaccgc
gtaaaagccgtgccatggaataagaaggtgtaa
DBGET
integrated database retrieval system
