Pangasianodon hypophthalmus (striped catfish): 113537360
Help
Entry
113537360 CDS
T05759
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113537360 (zc3h13)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
113537360 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
113537360
NCBI-ProteinID:
XP_026787596
LinkDB
All DBs
Position
Unknown
AA seq
1789 aa
AA seq
DB search
MSKIRRKVTVENSKTISESSSSTTTPSRRPSVFERLGPSTGSNATETQCRNWLKTGNCSY
GNTCRYTHGTPARGKNFSGAFSRSSERPTGDLRERMKNKRQDVDTDTQKRDQDEPTSPTT
RQRDSSRSRHREKEDIKITKERTPASEEEAAEWEANREDSDNGDYDYELSLEMKRQKIQN
ELMKLEQENMDKREELLIKKEESVTKTRTSSTSKDKGSPDHSSSKNSPLSRKSSGSPKRK
PSGSPKRKSIGKGSNSGKKEKKSSSSSVISSPVVEQSRTEEAESRSSKSGHSKKKGPRTP
SPPPPVPLDLPVGGKKHKGKHKNKEKSEDKQKEAKERGRDIDKHKEKKEKRRDRSDSSHK
AKRSVTSEERSGSVSSPGREVSPQTRRKSSSPKPATQKQSSPQRSRTPPRHHRSPSPTPR
PHHSPSSHSGSSHQRHSPSPRRRRSSVSPSYQRDLLPPLSSSPTAAQASRRSRSRSPPTP
QRSSPSSRHHSQGREREKERGRGERERSPGHDRRHERRDESRGKREKDSGRDDRSYEADQ
SSSRDERETRESRDRDRRFDRDRRDTRDDRQHRSSDAKDLRDTRDRSGRESMEHRERDRE
RERDRERERDRDRERTDAHRKDDASVQEERSYGRGHSREEGRSESRAESRSESRAERMGR
GRGRASDNPEKGSARGSRTSQADSGGHDGWESRSSGLRERSSERNTERGTERDRYDSDRQ
RGDQARDSSYDRRGSQADRDRRDHRDRDQRAPSPGRHQGRSEDTEREERRDERRSDRGED
RREDRGREREGRERDRERDREREREREREKEREREAERERERAREREREREREREREREE
REREREREREREEREREREREEREREREREREREERERERERERKERERERELRERERQR
EWEEREKGREERRERREEARDERSARDTHEERKNSGRKRHRVENTPSPRPSPKKVREGSP
ADSDGYNSTEEKGDKHRLLSQVVRPQEPSRSPPRVSTDEKPTRWRDSERRGDKKDGRGRH
EEAEPRSERGAGRGLERRGDHSSESSLNMPASETRRGKEQRDAITPPAPSAGGTEARDSA
SAGHEEGKKKTKSQKKNLKKNRKEDESTSAGGDRFNPEPPPPSSSSVPSEAPRPLLSPPK
MVKKKSMERRRKRSRGAESDPSEDEQPMSKRRRGPQTPPPINKEDLPSQRALISGHPIAA
PLKMDTNFSDWSDEEVPERSEASSERAPERLLPRRNPPLAPLLPDPPMVIHALPLQPLLP
QHMLRKPQQADQRQQRSSSMGSNPSRATSRRLRSPSNDSAHRTDDSQQGPRSRRARGQGA
NSRDRDRERDRERERERERDRVATNEPIGGREERKSRIDQLRRGEPSRSTSSDRQDSRSH
SSRRSSPESERQGRSRAGSHDSRERDRDRERDQFERDRKEYRQPQNQPISQQRDWEPEPR
EWGVRGREPLLLRPNREPIRERDLREMRERERLLPEGLLSHERLDRDRGDRERERDRDRD
RDRGERERMLPFDLPPLEPKSRAEMRMERGDYEPLLPREALVDVDKPRATDEPHVQMEPC
ETEKIDSLDEDEGKGEDAQSAVSGGEEYEPISDDELDEILADSQKRDDQQDEEKIPGPLD
VIDVDWSSLMPKQKQETRAPGAALLRFTPGAMLLRAGVSRRLAGPQLLARVKDVCAKELE
DAKDVEKLFEHDLGALNMAALNRRTERANLLRNLGPCGKALCARRDIAIRRQLLKNDKGT
TKQIYTSAPVVDQELLQLSIRLFKKKMAAGQEKADPAPVANAPAEVCVS
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtgacagtggaaaactcgaagaccatatcagagagcagc
agcagtacgaccactccatcccgcaggcccagcgtcttcgagagactcggacccagcacg
ggcagtaatgccacagagacacagtgtagaaattggttgaagacaggaaattgcagttac
ggcaacacttgtcgctacacgcatggaactccagcaagaggcaagaatttttctggagca
ttcagcagatcatccgagaggcccactggtgatctccgggagaggatgaaaaataagaga
caggatgtagatacagacactcagaaaagagaccaagacgaacctacttcacccacaact
agacagagagattcatctcgaagcagacacagagagaaagaggatataaagatcactaaa
gaacgaacgccagccagcgaagaggaagcagcagagtgggaagccaatcgcgaagactct
gataacggtgactacgattacgagttatccctggaaatgaagaggcagaagatccagaat
gagctgatgaagctcgagcaggagaacatggacaaacgagaagagctcctcattaagaag
gaggaatcagtgaccaagaccaggaccagcagcacctctaaagataaggggtctcccgat
cactccagctccaagaattcacccctgtcccgcaagtccagcggctcccccaaaagaaaa
cccagtggttctcctaaacgcaagtccattggaaaaggcagcaactccggcaagaaggag
aagaaatcgtcctcttcttcagtcatctcctccccggtggtggagcagagcagaacagag
gaggctgagagcagatcatccaagagtggacacagcaagaagaaagggccgcgcacgccc
agcccccctccccctgtgcccttggacttgcccgtagggggcaaaaagcacaagggcaaa
cacaagaacaaggagaagagtgaagacaagcagaaagaggccaaggagcggggcagggac
attgataagcacaaggagaagaaagagaagcgcagggaccgctccgacagttcccacaag
gctaagcgatcagtgacgtcagaagaacgttctggaagtgtgtcgtctccggggcgagaa
gtgtcgccccagaccaggaggaagtcctcatcccccaagcctgccacccaaaaacaaagt
tcacctcagaggtcgcgtaccccaccacgtcaccaccggagcccctctcctacgccccgc
cctcaccactccccctcatctcactctgggtcttcccaccagcgtcactctccatctcct
cgcagacgccgcagctccgtctccccgtcctaccaacgggacctgcttccccccttgtca
tcttcacccacagctgctcaggcctcacgccgctcgcgttcccgttcgccccccacgccg
cagaggtcaagcccctcctcccgccaccactcacagggccgggagcgggaaaaagagaga
ggacggggggagagggagagaagccctggccatgacagacgtcatgaacgcagagatgag
agccgcgggaagcgtgagaaagacagtgggcgggacgatcgcagctatgaggctgatcag
agctcctcacgagatgaacgtgagacccgagagagccgtgaccgagaccggcgcttcgat
cgagaccgacgagacacacgtgatgatcgacaacaccgcagcagtgatgccaaggacttg
cgggacaccagagaccgctctggccgcgagtcaatggaacacagagagagagaccgggag
agggaaagggacagagagagagagagggacagagatagggaaaggactgatgctcacagg
aaagatgatgcatcagtgcaggaagagagaagttacggaagaggacatagcagagaagag
gggcggagtgagagcagggcggagagcaggagcgaatcgcgtgcagagaggatgggaaga
ggacggggacgtgcatcagacaaccctgaaaaaggatcagctcgtgggtctcgtacatca
caggcagacagtgggggccatgatggatgggagtctcgtagcagtggcttaagagaaagg
agctctgagagaaacacagaaagggggacagaacgtgatcgctatgacagcgacaggcag
cgtggagaccaggcccgagattcgtcttatgaccgccgtggaagtcaggcagacagagat
cgccgcgaccacagggacagagatcagagagcaccctcaccaggtcgccaccaaggccgc
agtgaagacacggagcgtgaggagaggagagacgagaggaggagcgaccgaggggaggac
agacgagaggacaggggccgtgagcgagagggccgcgagcgagacagagaaagggacagg
gaaagagagagggagcgggaaagagagaaagagagggagagagaggccgagagggaaagg
gagagggccagggagagagaacgtgagagagagcgggagcgagaaagggagagggaggaa
agagagagggagcgagagagggaacgggagagggaggaacgtgagagagagcgagaacga
gaggagcgggagagggagagagagagggaacgcgagagagaagagcgggagcgggagagg
gaacgggagaggaaggagagagaacgggagagagagctccgagagagggaaaggcagaga
gaatgggaagagagagagaaaggcagggaggagaggcgggagaggagagaggaggcacga
gacgaacgttcggccagagatactcatgaagagcgaaagaacagtgggcgcaagaggcac
cgtgtggagaacactcccagcccccggccctctcctaaaaaagtgcgggaaggtagccct
gcagacagtgatggctacaacagtacagaggaaaaaggtgataaacacagactcctgagt
caggtcgtccgtcctcaggagccaagccgctcccctccccgcgtatccactgatgagaag
ccaacgcgctggagggacagtgaacgtcgcggtgacaagaaggatgggcgtggtcggcac
gaagaggcagaacctcgtagtgagcgaggtgcaggtcgagggttggagcggcgtggggat
cattcttctgagagttctctgaatatgccagcatctgagactcgaaggggtaaagagcag
agagatgctatcacaccacctgccccctcggctggtggcactgaggctcgagattctgca
tcggccgggcatgaggaaggcaagaagaaaacaaagtctcagaaaaagaacctgaagaaa
aacaggaaagaggatgagagcactagcgctggtggtgaccgttttaaccctgagcccccg
ccaccttcttcctcctcagtaccctctgaagctccacgcccacttctctcgcctcctaag
atggtcaagaagaaatcaatggagcggaggcggaagcgctcccggggcgccgagtctgac
ccatctgaggatgagcagcccatgagcaagagacgccgcggcccacagacacctccgccg
atcaacaaagaggacttgccttcccagcgggcgttgatatctggccatcctatagcagcg
ccgctcaaaatggacactaacttcagtgactggtctgacgaggaggtcccagaacgcagc
gaagcttcatctgagcgagctccagagcggctgctgccccgccgaaacccacctctagcc
ccgctgctccctgacccgcctatggtgatacatgcactcccgctgcagccgctgctgccg
cagcacatgttgcgcaaaccacagcaggccgaccaaaggcagcagcgcagtagcagcatg
ggtagcaacccaagtcgggcaacatcgcgccggctccgttcaccatccaatgactcagcc
catcgcacagacgacagccaacaggggccacgatcacgcagggcacgtggacagggcgcc
aattcccgtgaccgcgacagagagagggacagggagagagaaagggaacgagagagggat
agggtggcaaccaatgaaccgattggaggaagggaggagaggaagtcgaggattgaccag
ttgaggagaggagagccgagtcgcagtacttcatcagaccgacaggactcacgtagtcac
agttctcggcgcagctctccagagtcagagcggcaaggtcgctctcgggccggctcgcat
gacagccgtgagcgtgaccgggaccgtgagcgtgaccagtttgagcgtgacaggaaggag
taccggcagccgcagaaccagccaatatcacagcagcgtgattgggagccagaaccccgt
gagtggggtgttcgaggtcgcgagcccctccttctccgccctaaccgggagccaatcaga
gagcgggacttgcgcgagatgcgtgagagggagagactgctgcctgagggactgctgtca
catgagcgccttgaccgcgatcgtggcgatagggagcgagaacgggacagggaccgagac
agggacaggggagaacgtgagcgcatgctgccctttgacctcccgccattagaacccaag
agccgagcagagatgcggatggagcgaggagactacgagcccctgctgcctcgagaagcc
ctcgtggacgtggacaaacccagagctacagacgagccacatgtacagatggaaccctgt
gagacagagaagatagatagccttgatgaggatgaagggaagggtgaggatgcccagtcg
gcagtgtcgggtggggaggaatacgagcctatcagcgatgatgagctggatgagatcttg
gccgacagccagaaaagagatgatcagcaggatgaagagaaaatcccaggacccctggac
gtgattgatgtggactggtccagcctgatgcccaagcagaaacaggaaacccgggcacca
ggggcagcactgcttagattcacacccggagccatgctgctgcgggcgggcgtctctcgc
cgtctggctggtcctcagctcctcgcgcgtgttaaagacgtctgcgctaaagagctggag
gatgctaaagatgtggagaagctgtttgagcacgaccttggtgccctgaacatggccgcc
ctcaacaggaggacagagagagcgaacctactgagaaacctggggccgtgtggcaaggct
ctctgtgcacgtcgagacattgccatccgcaggcagctcctcaaaaatgacaaggggacg
actaagcagatctacaccagcgctccagtggtggaccaagaactcctgcagctcagcata
cgtctgtttaagaagaaaatggctgccgggcaggagaaagccgacccggcgcccgtggct
aacgccccagctgaggtgtgtgtgtcttga
DBGET
integrated database retrieval system
