Pangasianodon hypophthalmus (striped catfish): 113539449
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Entry
113539449 CDS
T05759
Name
(RefSeq) rootletin-like
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rootletin
TMF_DNA_bd
Crescentin
Motif
Other DBs
NCBI-GeneID:
113539449
NCBI-ProteinID:
XP_026790992
LinkDB
All DBs
Position
Unknown
AA seq
1521 aa
AA seq
DB search
MSAPGSPRADSRLEQVIQLEQALRLEAGVSDSDSPECVSLSQQVVELRRRLDEEQNAYKR
KLTAYQEGQQRQAQLVQKLQAKVLQYKKKCSDLEQSLLEKSSEQVSARIHTELLMLCFVM
SSRSSSLSAVNAMLREQLEQAGLANEALSQDIRRLTADWTKAREELEQKESDWRREEESF
HNYFSSEHSRLLTLWRQVVSFRRSVCEMKSATERDLSVMRSDLAQAAQSVQLQCVCMCVA
VRSREDGSALVLEREAAQRITLEQLLREKESEITESQSEREKLNSRLADAEREMERLRAR
VDERENEITSLTRRLQEQSGDEESELHTLRAHINTLLDTLRDIAQLMMSDSDSGVFGSSV
ESESENSVLALLPLMRSSSPQRSSSPQRSSSPRRPSALPLPESALSALRGMATNRHLQLQ
EVKGRLQSAQSSVQQLRKQQGEAESGRREAELRLQAMQGERDDAQRERETAVRERDRLRQ
ERDKLCSEKECVQQSVQALQTKLQLLQMDCERLQQAAASAQRERDHERVERESAVQERDR
ARVETERVCVSLSLSHTQTHTHTHTHTLDTRQLLVEEERSVLQGQKREAEQEKLTIRDEL
VRLEQDRLELDSNRLTLLQSLQESEQARAGLEAELQMLRMDRQKLQEKVTQLCGEVSSLG
AELGIIRGEGERRGVALEEAGRTRAELSRERAGLVVQLTASERDNAALTEELAAFRVEKE
ALEASLFEVQQQLMQSDLRREHLENENLNLRTRHDNATAELKRVRADGEKAAAQSERERQ
ALKQELINAQHEAQLSLRNALSDHQEELERLTNDKEALRCSLQAEQEEALRRVREEMEER
LQRMEREREELQEEIRALQHARDQSLLQAESDKQQALSLKETEKAMLSERVCSLQAELSS
ANLELERLTRDAQHLKEQERATVGAVNAELQELRMRLEDTVSSNRRELRRLQENCTEEQI
RADNALRELEECRALLSASEESRDATRRDLLEMDRRLSHSRDTGEGHRRDTVELRRSLGD
VTKEKDALNQSNGQLREALRAAESERISVKRQCEEKEQRVAVLEETLASAQKEVGDLRSC
LREVERSRLEARRELQELRRQVKVVDVEREQKAREVAELQTRLSLEEQKEEERGKELFSI
KQKLTEAEAARNSLRKELSCVQKRLSDSESSRRGLERDLSSQLHEARGSEKKLQDELRNL
SVRAQAGVEASTETQLQLSEAQGRLGATEAELTRSEAARRDLEFRLASLQSALTRTLGIG
AGVRSLRGRSPAGSAHSSLISVVMPRRRSVSPLRSSLSPPKDVVDKSSKSSPDNTNVSRP
LSPERGDTPIPLVQPDLDPETLRSGLRDFLQELREAQRERVSTLKEQLQHELRRRHPSLP
LSENEARTFAVRSEALHEMEWVESEWVESEWVESQCVMTRQTPQKRSVLQDSEEEEEKSK
GEEEEGVRRIAREMRDRTRTFTNHTTDTETDSNTNHYTTETVGVCWAFVFMKSFTMGRKL
KLRDGAASVPELLKDEFQEHF
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccccgggaagcccgcgcgcagactccagactggagcaggtcattcagttggag
caggccctgcgtttggaggcgggggtcagtgacagcgactctccggagtgtgtgagtttg
tctcagcaggtggtggagctgcgacggcgtctggatgaagaacaaaacgcttacaaacgc
aaactcaccgcctaccaggaggggcagcagagacaagctcaactcgtccagaaactacag
gccaaggttctgcagtataagaagaagtgcagtgatctggagcagtctctgctggagaaa
tcatcagagcaagtgagtgcgagaatacacacagagctacttatgctttgttttgtcatg
tcgagcaggagcagcagtctatcggcagtgaacgcgatgctgcgtgaacagctggaacag
gccggactggccaatgaggcgctgagtcaggacatccgcagactcactgctgattggacc
aaagcgagggaggagctggagcagaaggagtctgattggaggagagaggaggagtcgttc
cataactacttcagcagtgagcacagtcggctgctcactctgtggaggcaggtagtcagt
ttccgcaggagtgtgtgtgagatgaagagtgccaccgagagggatctgtcagtgatgcgc
agtgatctggctcaggcggctcagagcgtgcagctgcagtgtgtgtgcatgtgtgtggcg
gtgcggagtcgtgaggacggctcggcgctggtcctggagcgcgaggcggctcagcgcatc
acactggagcagctgctccgagagaaagagagcgagatcaccgagagccaatctgagaga
gagaaactcaacagcaggctggcagacgcagagagagagatggagagactcagagctcga
gtagacgagagagagaacgagatcacgtcactcactcggagactgcaggagcagagtgga
gatgaagaatcagagctccacacactcagagctcacattaacactctgctggacaccctg
agagacatcgcacagttgatgatgtcagattcggactcgggcgtgttcggctcgtcagtg
gagtccgaatcagagaacagcgttttggctctgttgccgttgatgcgctcctcctccccc
caacgatcctcgtcaccacagcgatcatcgtctccacggcgaccctccgccctgcccctc
cccgaatccgctctctcagctctgcgtggcatggcaaccaatagacatctccagctccag
gaggtcaaaggtcgtctgcagtcagcgcagtcgtctgtccagcagctgcgcaaacagcag
ggggaggcggagtcaggcaggagggaggcggagctacgcctgcaggccatgcagggtgag
agggatgacgctcagagagagagagagacagcggtgcgagagagagaccgactccgacaa
gagagagacaaactctgcagtgagaaggagtgtgtgcagcagtctgtgcaggctttgcag
acaaaactgcagctgctacagatggactgtgagagactgcagcaggctgcggcgtctgcg
cagagagagagagatcacgaacgagtggagagagagtcggccgtgcaggagagagatcgc
gccagagtagagaccgagagagtgtgcgtttctctctctctctctcacacacaaacacac
acacacacacacacacacacactggacaccagacagctactcgtggaggaggagaggagt
gtgctgcagggtcagaagagagaagcggagcaggagaagctgaccatcagagacgagctc
gtccgattggagcaggaccgtctggagctggactccaaccgcctcactctcctccaatca
ctgcaggagtctgagcaggccagggcggggctggaggcggagcttcagatgctccggatg
gatagacaaaaactgcaggagaaagttacacagctgtgtggtgaggtgagctctttaggg
gcggagcttggtatcatacgcggtgagggggagagaaggggcgtggctctggaggaagcc
ggacggaccagggcggagctttctcgtgagagggcggggcttgtggttcaactcacggcg
tctgagagagataacgctgcactgacggaggagctcgctgcgttcagggtggagaaggag
gcattggaggcgagtctgtttgaggtgcagcagcagctgatgcagtcagacttgcgcaga
gagcacctcgagaatgaaaacctcaacctgagaacacgacacgataatgctacagcggag
ctgaagcgtgtgcgtgcggatggagaaaaggctgctgctcagagtgagagagagagacag
gctcttaaacaggagctgattaacgctcagcacgaggctcagctctcgctccgtaatgcg
ctgtctgaccaccaggaggagctggagagactcaccaatgacaaggaggctctgcgctgc
agtctgcaggccgagcaggaggaggcgctgcggcgtgtgagggaggagatggaggagcgt
ctgcagaggatggagcgagagcgggaggagctgcaggaggagattcgggctttacagcac
gcacgggatcagagtctcctacaggccgagagcgacaaacagcaggcgctctccctgaag
gagacggagaaggccatgctgtccgagagagtgtgttcactacaggccgagctgagctct
gcaaacctggagctggaaagactgacgagagacgcacaacacctgaaggagcaggagaga
gctacagtaggagctgtgaacgctgagctccaggagctgcgcatgaggctggaggacacg
gtgagctctaacagacgggagctgcgcagactgcaggagaactgcacagaggagcagata
cgtgcagacaacgcgctcagagagctggaggagtgtcgcgctcttctctcagccagcgag
gagagccgagatgccacgaggcgagaccttctggagatggacaggcgtctgagccattca
cgtgacacgggggaggggcatcggcgagacacggtggagctacggcgctcccttggtgat
gtcactaaagagaaggacgctctcaaccaatcaaatggccagctgagggaggcgctgaga
gcagcggagagcgaacggatcagtgtgaagcgtcagtgtgaggagaaagagcagcgcgtg
gccgtgctggaggaaaccctggcgtctgcgcagaaggaagtcggggatctgcgcagctgt
ctgcgggaggtggagcgatcacgactggaggccaggagagaactgcaggaactgcgcaga
caggtgaaggtggtggatgtggagcgagagcagaaagccagagaagtggcagagctccag
actcgtctctcactggaggagcagaaggaggaggaacgagggaaggagctcttctccatc
aaacagaaactcactgaggcagaggcagccaggaactccctcagaaaagagctgtcctgc
gtgcagaagcgtctgagcgacagcgagagcagtcggcgtggactcgagcgggatttgagc
tctcagctgcacgaggcgcgcggctcagagaagaagctgcaggacgagctgaggaacctg
agcgtgcgtgcgcaggccggggtcgaagcgtctacggagacgcagctgcagctcagcgag
gcgcaggggcgcctcggtgccacggaggcggagctaacgcgttccgaggccgcacgccgt
gacctcgagttccgattggctagtttgcagtcggcacttactcgaacgctgggtatcggc
gccggggtgcggagcttacgcggacgcagtcctgcaggctccgcccactcgtcactcatt
tctgtggtgatgccccgccgccggagcgtctctcctctacgcagctcgttatcaccccct
aaagatgttgtggataaatccagtaaatccagtcctgataacacgaacgtgtctcgtccc
ctgtcccccgagagaggagacacgcccatccctctcgtacagcccgacctcgacccggaa
acgctccgcagtggccttcgagacttcctgcaagagctcagagaagcccagagagaaagg
gtgtccactctgaaggagcagctccagcacgaattacggcgccgacatccgtctctgccc
ctgagtgaaaatgaagccaggaccttcgccgttcgcagcgaggcgctacacgagatggag
tgggtggagtctgagtgggtggagtctgagtgggtggagtctcagtgtgtgatgacaaga
caaaccccccaaaaaaggagtgtgctgcaggacagtgaggaggaggaggagaagagtaaa
ggagaggaagaagagggtgtgaggaggatagcaagggagatgagggacaggactagaacc
ttcaccaaccacaccacagatactgaaactgactctaacactaaccactacaccacagaa
acagtgggtgtgtgttgggcttttgtcttcatgaagagcttcacgatgggacgcaaactt
aaactgagagacggagctgcttctgttcctgagctcctgaaggacgagtttcaggaacac
ttttaa
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