Pangasianodon hypophthalmus (striped catfish): 113539577
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Entry
113539577 CDS
T05759
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113539577 (tmf1)
Membrane trafficking [BR:
phyp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
113539577 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
Tup_N
Motif
Other DBs
NCBI-GeneID:
113539577
NCBI-ProteinID:
XP_026791209
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MSWFNASQLSSFAKQALSTAQKSIDRVLDIKEEDQWGDAITPRVDDGESNPVSTGWGMNQ
WDSPSEECPKTLTPLSEAITKPVTRTVVDETESFFSAFLSPGDGQPVKTPVVSVAPTKSH
RRPQEKSEKEKQPPAKDDVDSSTLSQEDLSKQSSVQVAESQSEEVKPQEEVSVLESVLEE
TEETEDTESKTETQDSTSSPQVPQVDMPAEPKSTEKVKSSGSAELKSPGKDPPKDIMLES
KDAKAEDRQSDTPSPPVSAFSSGTSTTSDIEVLDHESVISESSASSRQETAEVKAGLHLM
QGSFQLLSASTCSDFPRLDDYPKLMESCGSSSDAFERIDSFSVHSLDSRSVSEVNSDDEI
PGSRTLASVTAGTSPLPALPAPQTNQELEEAEGRTTDCVKDQSVDEMEESGRSATPVNSE
QPEELPEEEQESGSHVTMSNERTEPEESRDSVTSPITEEQKGASTCQLLELQKIVDELTG
RLEKREAQLLAVSKDKARLEEECDNLKDEMITLKEESSSVQSLKDEFTQRIADTERKAQL
ACKERDIAKKEIKGLREELSTRFNSAETLELIREKEEQIKGLLEEGEKLSKQQLQHSNII
KKLRAKEKESDVKIAKQSKKLKEQEDELKQLQEVLDAKEELEKQHRESIKKLNSAVERQE
KELSRVQTENEEVHEKNRSLQAALDASYKELAELHKSNVTKASEAQELALSREVQAKEEL
SLALDKAQEEARLQQEALANQVADLRLALQRAEQQQARKEDYLREEISELQQRLQGAETR
NQELSQSVTSATRPLLRQIENLQSTLGSQTASWEKLEKNISDRLAEAQAQLAVAVEKERS
VTEELHAVKAQLASLESQNSSLRQEKGRLQGQLDVEKTRREKLENDSSRERVELENLKGE
YTRALEEAKKEKLLLTNQLEMEKVKVEQEKKKCYLAQEALKEKERKALSVSLSEPPASST
PSLSRSSSISGVDHSGIHTSLLSHQEDSPDHSFASMTLGGSSLYEAARLSGGSSIIENLQ
SQLKLREGEIAQLQVEISNLERTRSAMAEELVRLTNQNDELEAKVKEIPRLRVQLKDLEQ
RHNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLKNQK
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcaacgcttctcagttgtccagtttcgctaaacaggctctgagcaccgca
cagaaatccatcgaccgagttctggatataaaagaggaggatcagtggggcgacgccatc
acacctcgtgtagacgatggagagagcaacccagtgtccacaggatgggggatgaaccag
tgggattctccttcagaggaatgcccgaagaccctcacgcctttgtccgaggccatcact
aagcccgtcactcgcaccgtggtcgatgaaaccgagagtttcttcagtgccttcttgtct
cctggagacgggcagccggtcaagacgccggtggtgtcagtggcgccgaccaaatcccac
cgtcggccgcaggagaaatcggaaaaagagaagcaacctcctgccaaggatgacgtagac
tcttccacgctttctcaggaagatctgagtaaacaaagcagtgtacaagtagcggagagc
cagtcggaggaggtgaagccacaagaagaagtgtctgttctggagtctgttctggaggaa
acagaagaaacagaggacactgagagcaaaacggagacacaggattccacttcaagtccg
caagtcccacaagtggacatgcctgcggagcccaaatctacagaaaaagtcaagagcagt
ggttctgctgagcttaagagcccggggaaagaccctcccaaagacatcatgttggaatcc
aaagatgctaaagcagaagacaggcagagcgacactccgtctcctcctgtgagcgccttc
tcctccggtacctccaccaccagtgacatcgaggtgctggatcacgagagcgtcatcagc
gagagctcggccagctccaggcaggagacggccgaggttaaagcggggctgcacctcatg
cagggctccttccagctcctctccgcttcgacgtgcagcgatttcccgcgtctggacgac
tacccgaagctgatggagagctgcgggtcctcgtctgacgccttcgagcgcatcgactcg
ttcagcgtgcactctctggacagccgcagcgtcagcgaagtcaactcagacgacgagatc
cccggcagccgcactctggcgtctgttactgccggaaccagccctcttccggctctaccg
gcaccgcagaccaatcaggagctggaagaggcggagggaaggacgaccgactgcgtgaag
gaccaatcggtagacgagatggaggagagcgggcgtagcgcaactccggtgaactccgaa
cagccagaagagctgccggaggaggagcaggaatccgggtcacatgtcacgatgtctaat
gaaagaactgaacctgaagagtcacgtgactcagtgacatcacccataaccgaggagcag
aaaggagcctccacctgccagctcctggaactacagaagatcgttgacgagctcacaggc
aggctggagaaacgagaagctcagctgctagctgttagcaaagacaaggctcgtctggag
gaggagtgtgataacctcaaagatgagatgatcactctgaaggaggagagctccagcgtg
cagtctctcaaagacgagttcacacagcgcatcgccgacaccgagaggaaagcgcagctc
gcctgcaaggagcgggacatcgccaagaaggaaatcaaaggtcttagagaagagctgtcg
acccggttcaactccgccgaaaccctggagctgatcagagagaaggaggaacagatcaaa
ggccttctagaagagggcgagaagctgtccaagcagcagctgcagcactccaacatcatc
aagaagctcagggccaaggagaaggagagcgacgtgaagatcgccaagcagtccaagaaa
ctcaaagagcaagaggatgaactcaaacagctgcaggaggttctagatgcgaaggaggag
ctggagaagcagcacagagagagcattaagaagctgaactctgccgtggagcgtcaggag
aaggaactgagcagggtccagactgaaaatgaggaggtgcacgagaagaaccgcagcctg
caggccgccctggacgcctcgtacaaggagcttgccgagctgcacaagtccaacgttacg
aaggccagcgaggcacaggagctggctctcagccgcgaggtccaggccaaggaggagctc
agcctggcattggacaaagcccaggaagaggcccgccttcagcaggaggcactggccaat
caggtggcagatctgaggttggctctgcagagagccgagcagcagcaggccaggaaggag
gactacctccgagaggagatcagcgagcttcagcagaggttgcagggggcggagaccaga
aaccaggaactaagtcagagcgtcacctcggcgacgaggcccctcctcaggcagattgag
aatctgcagtctactctgggatctcagacggcatcctgggaaaaactggagaagaacatc
tcggaccgcttagccgaggctcaggcccagcttgctgttgcggtagagaaggagcgctcc
gtgacagaggaactacatgccgtcaaggctcagctggcttctctggagtcccagaattcc
tcactgcggcaggagaagggacggctgcagggtcagctggacgtggagaagactcggcgt
gagaagctggagaacgacagcagcagggagcgtgttgaactggagaatctgaaaggcgag
tacactcgcgctctggaagaggccaaaaaggagaagctgctgctaacaaaccagcttgag
atggagaaagtgaaggtggagcaggagaagaagaaatgctacctcgcacaagaggccttg
aaggaaaaggagcggaaggcgctgagtgtatcactgagcgagcctcctgcatcctcaact
ccatctctctctcgctccagctccatcagtggggtggatcacagcggcatacacacctct
ctgctctcccaccaggaggactctcctgatcactcgttcgcctccatgaccctcggcggg
agcagcctgtacgaagcggcgcgtctgagcggaggctccagcatcatcgagaacctgcag
tcacagctgaaactgcgggagggagaaatcgcacagctccaggtggagatctcaaatctg
gagcggactcgctcggcgatggcagaagaactggtgcggctgactaatcagaacgatgag
ctggaggccaaagtgaaggagatccccagactcagagtgcagctcaaggacctggagcag
agacacaacaccatcctgcagatgtacggagagaaagcagaagaagccgaggagctgcgg
ctcgacctggaggacgtcaagaacatgtacaagacccaaatcgacgagctgctcaagaac
cagaaataa
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