Pangasianodon hypophthalmus (striped catfish): 113540107
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Entry
113540107 CDS
T05759
Symbol
shroom4
Name
(RefSeq) protein Shroom4 isoform X1
KO
K18625
protein Shroom
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
phyp04812
]
113540107 (shroom4)
Cytoskeleton proteins [BR:
phyp04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
113540107 (shroom4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ASD2
PDZ
PDZ_6
eIF3_subunit
Trypan_PARP
Motif
Other DBs
NCBI-GeneID:
113540107
NCBI-ProteinID:
XP_026792148
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
METVEQLVTFNHIHVELNGGAPWGFTLKGGLEHGEPLIITKIEEGGKAAECKKLRVGDEL
VNINGSALYGSRQEALILIKGSYRVLKIVVRRRTVPLIHPHSWHLVKLSEAPSVPGSAGS
SDGPLAMQLHPTPFSVPWHSGGDSELSMPLGHLSRHYSTDRSSSVGSMESLENPPSQGYY
DSQLSPIDPAIFNNKRDSAYSSFSASSNTSDYTVSLRPEENSSMDSLLQGFGPSCRFTEG
HPHSAASGPGELHCEEGILKSRPLPHRPEAKVRPSSYSYEEDKCGPPQPPMRKDSFRATR
GLPEVLDKRCVSAPVGVSSLTCCTIEDPPHIRKALNGSMCLNGPDNDQDLKGNKAEPYYT
INSQKELFTDNKVSSKEGCQKSSHFQPLDRHSPRPSPPTAESLDSQLNHLDNNPQPRMHR
HSAPEKLLVSQLHMIELSSDNSAHSMSPPSLWSNTLHPREELREDSPAVAQGKWGGSRCS
TPGSLTTSELEEHRAEGEPFDSGQILTPIQHTWGRSVSVPGETIGNGFTESGPCIDSQLH
ERGFETISAASSMDTLLENQEQGEGKSDDGEISKPPQKRQFRSSKSRRRSERFATNLRNE
IQRKKAQLHKSKGPGGLLCDGETVEEEDMEEKSPSEVPAIHQHRTQTQTNQHNSFQKCTP
SQARTIASNSTFPGRCCGTNSAEHSGSRTEDFHLSQDETHGVQSAEVNRPVCVRVVEELA
PPGKARRWRWTPEHKLQPEIESTEIKKNGEGTAPPSWNLGTTRGRVVSSGGRSTRADDCD
IPPFADRRKFFEETSRNLSQSVTNLAGLTGHRQRPEKHGRKKDPTSPEPLESVPDLGRRR
FSYQGGINDGTSVNSFDTRRNRVQQERDRERENTLEREWEKEREKEKQMEKEQEQEMRKE
QERLQAWEKEQEQERERERARKETERERQRVQQMERDWETSRDRFYAGYDLNNTTVLPPL
PHDNLKQPLTAQNLTLRNSRSASFHNKTNPDIQKPCSAFRPVTSQQYQSDHCCLHPGYKA
RSCTPTEAFPVHELEQTKLRRKFSLTERDYTQCRRDSRPAEVTVGRGFQCQWHNRLCDCN
NKDQPIMSSTLTNRAMSENDIRIETKYLHSHGAAATNNSRMSSSIVRELDENVVSVVETK
KKKGPPPPRPPPPKWEQFHKRRASHHSLFSSQPASSSQFQTYTPCPSTALEMTRQRSYSL
PPSDDAESHQALLNPALNNRAFKPVALPPKERDTTRVQHYEIKSSEDIPTSSNESSQRVS
EQSLAQPSDQYIPAVVKPVIYKHRAEWDLTSPHNYTASSNASKSPVLVPTLENGSCTGPV
YPESYFTMNYNHHQHLQNQPQQICMPGTTIKTLEPSNQSLPPSEDQSLPYETDIDEFHEN
EETAVEQQRQAEDRTEIQCFAQPVTVLETDIDTVTDDEAPSSRMRRGQRASIVDSLLEED
CGRAGKELMGELFPHYTGSGAEGWRGGNIVSGDMVERSSRQSPSVPQGSTSTSYRGSNNK
AQLLNKMPNFSEMKEEDEELNYKRQLMESLRKKLGVLREAQRGLQEDIRANAQLGEEVES
LVLAVCKPNEVDKFRMFIGDLDKVTSLLLSLSGRLLRVESALDCLDPESGHRERLPLLDK
KKQLLAQLAEAQELKEHVDRREEAVGRVLGRCLTPEQLRDYSHFVKMKAALLVEQRQLDD
KIRLGEEQLRGLKESLGLGYGPY
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggagactgtggaacagctcgtgacctttaatcacatccacgtcgagctcaacggaggc
gctccgtggggcttcacgctgaaaggaggactggagcacggagagccgctcatcataaca
aaaatagaagaaggagggaaggcagctgagtgtaagaagctgagggtgggagacgaactg
gtcaacatcaacggctctgcactctacggctcccgccaagaagctctgatcctcatcaaa
ggctcctacagggtcctcaagattgttgtccgcagacgcactgtgccgctgattcatcct
cactcctggcacctggtgaagttatcagaagcaccctccgtgcctggttcagcaggcagt
tcagacggcccgctggccatgcagctccaccccacacccttcagtgtaccgtggcactct
gggggtgacagtgagctgtccatgccgttgggccacctctcccggcactacagcacagac
cgcagcagctctgtggggagtatggagagtctggaaaaccctccaagtcagggttactac
gacagccagctctctcccattgaccctgccatctttaataataaacgtgactcggcttat
agctctttctctgcaagctcaaacacatctgactatacggtatctctgcgccctgaggaa
aacagctctatggacagtctcctgcagggctttggcccctcctgcaggtttacagaggga
catccacattctgcggctagtggcccaggagaactgcactgtgaggaggggattctcaag
tctaggcctctgcctcataggccagaggctaaagtacgtccatcatcctatagctatgaa
gaagacaagtgtggacctccacaacctcccatgaggaaggatagttttagggctaccaga
ggcctaccagaggtgttggataaacgttgtgtgtctgctcctgttggtgtgtcaagtttg
acttgctgcactattgaagaccctcctcacatccgcaaggcactgaatgggagtatgtgt
ctgaatggtccagacaatgaccaggacttgaagggaaacaaagcagaaccttattacaca
ataaattctcaaaaagaattgtttacagataacaaagtcagctcaaaagagggatgccaa
aagagcagtcacttccagcccctagataggcattcacccaggcccagtcctccaacagca
gagagccttgatagtcaactcaatcatttagataacaatccccagcctaggatgcacaga
catagtgcccctgaaaaattacttgtctctcagttacacatgatagagctctccagtgac
aatagtgcacattccatgtcccctcctagcctgtggtctaatactctgcaccccagggag
gaactacgtgaagacagtccagctgtagctcagggtaaatggggaggaagcaggtgctcc
acacccggttcactgactacttcggagctagaggaacacagggcagagggagaaccattt
gattcaggccaaatacttactcctatccagcatacttggggaagatctgtcagtgttcca
ggtgaaactataggaaatggatttactgagtctggaccctgcatagattctcagcttcat
gagagaggttttgagaccattagtgctgcctccagcatggacactctacttgagaaccag
gaacaaggagaaggcaagagtgatgatggtgaaatttcaaagcctcctcagaagcgccag
tttcgttcatctaagtctcgccgtcgaagtgaacgttttgccacaaaccttcgcaatgag
atccagaggaagaaggctcagctacacaagagcaaaggcccaggtggtctgctgtgtgat
ggcgagactgtagaggaagaggatatggaagaaaaatccccatcagaggtgccagccatc
catcaacacaggacccaaacacagactaatcaacacaacagcttccagaagtgtactcca
tctcaggccagaacaattgcctcaaactcaacatttccaggcagatgctgtggaacaaat
tctgcagagcattcagggagcagaactgaagatttccatctttcacaggatgaaacccat
ggagtccagtcagctgaggtaaacagacctgtatgtgtgcgtgtggtcgaagagttggca
ccaccgggtaaagccagacgttggcgctggacacctgagcacaaactgcaaccagaaata
gaatcaactgaaataaagaagaatggtgaaggaacagcaccgccttcttggaaccttgga
acaacaaggggaagagtggtttcttcaggtgggcgctctacccgagctgatgattgtgac
atcccaccttttgcagaccgcaggaagttctttgaagagactagcagaaacctgagccag
tctgtgacaaacctggcagggcttacaggccaccgccagagaccagagaagcatgggaga
aagaaagatccaacttcccctgaaccccttgaatcagtccctgaccttggacgtaggagg
ttctcttaccagggtggaattaatgatggaacctcagtcaattcatttgatactagaaga
aacagagtccagcaagagagagacagagagagagaaaatacactggagagagaatgggag
aaggagagggagaaagagaaacagatggaaaaagaacaagaacaagagatgcgtaaagaa
caggagaggctacaggcatgggaaaaagagcaggagcaggagagggagagagaaagagct
agaaaggaaaccgaaagagagcgacagagagtgcaacagatggagagagactgggaaacc
agtagagatcgcttttatgcaggatatgacctcaacaataccacagtgttaccacctttg
cctcatgataacctaaaacaaccacttacagctcagaatctaaccctgcgtaattcacgc
tctgccagttttcataacaagaccaaccctgacatccaaaagccatgctcagccttccga
cctgtaactagccagcagtatcaatctgaccactgctgtctacaccctggatacaaggcc
aggagctgcactccaacagaggcttttcctgtgcatgagctggaacaaacaaaacttagg
aggaagtttagcctgactgaaagggactatactcagtgtagacgagattcaagaccagca
gaggttacagtgggtcggggatttcagtgtcagtggcacaacagactatgtgattgcaac
aacaaggatcaacccatcatgtcatcaacactgacaaaccgagccatgtctgaaaatgac
attcgcatagagaccaagtatcttcatagccatggtgcagctgctaccaataatagcaga
atgtcttcatccatcgtcagggaactggatgagaatgttgtatctgtagttgagacaaag
aagaaaaaagggcctcctcctcctcggccaccacctccaaaatgggagcagttccataag
agaagggcatctcaccacagtctcttctcttcccaacctgcctcttcttcccagttccaa
acatacacaccctgtccatccactgccctggaaatgactcggcagcggtcctacagcctt
cctccaagcgatgatgcagaaagtcaccaagctctgctaaaccctgccttaaataacaga
gctttcaaacctgtggccctgcctccaaaagaacgagacactaccagagttcagcactat
gaaataaagagttccgaagacataccaacatcctcaaatgagtcgagccaaagagtttct
gagcaaagcttggcccagccttcagatcagtacataccagctgtggtgaaaccagtcatt
tataagcatagagcagagtgggacttgacttctcctcacaactacacagcaagcagcaat
gctagcaagtcaccagtcctggtccctactttggagaatggctcttgcactggacctgtc
tatcctgagtcctacttcacaatgaactacaaccaccaccagcatttacagaaccagcct
cagcaaatatgcatgcctggcacaaccatcaagactctggaaccttccaaccaaagtcta
cctcccagcgaggatcaatccttgccctatgagacagacatagatgagttccatgagaat
gaggaaacagcagtggagcagcaaaggcaagcagaagacaggactgagattcaatgtttt
gctcagccagtgacggtgctggaaactgacatcgacactgtgactgacgatgaggctccg
tcatcacggatgaggagagggcaacgggcgtccatcgtggactctttattggaagaggat
tgtggcagagctggaaaggagcttatgggagaactgttccctcactatacagggagtgga
gcagaaggctggagaggaggcaatatagtgagtggagacatggtagagaggtcttctaga
cagagcccctcagtaccacagggctcaacctctaccagctacagaggatccaacaacaaa
gctcaactccttaataagatgccaaacttctcagagatgaaggaggaggatgaagaactt
aattacaagaggcagctgatggaaagcttgcgtaagaagctgggtgtgttgcgggaagcc
caaagaggtttgcaggaggacatcagagccaacgctcagcttggtgaggaggtggaaagc
ctggtgctggccgtctgcaagccaaacgaggtcgacaagttccgtatgtttattggagac
ctggacaaagtgacaagtcttctgttgtcgctctccggcaggctgctcagagtggagagt
gctttggattgcctggacccagaatcaggccatcgtgaaaggctccccctgttggacaag
aagaagcagctccttgcacagctggctgaggctcaggagctgaaggagcatgtggaccgg
agggaggaggctgtgggcagggtgctgggtcgctgcctgactccagaacaactgcgtgat
tacagccattttgtgaagatgaaggcagcactgctggtagaacagcggcagctggatgat
aaaatccggctaggggaagaacagctccgaggcctgaaggagagccttggcctgggatac
ggcccttactga
DBGET
integrated database retrieval system
