Pangasianodon hypophthalmus (striped catfish): 113540927
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Entry
113540927 CDS
T05759
Symbol
chd9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113540927 (chd9)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113540927 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
DUF5994
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
113540927
NCBI-ProteinID:
XP_026793418
LinkDB
All DBs
Position
Unknown
AA seq
2914 aa
AA seq
DB search
MDYFGDPNIFEDCFPSGHVSLVDELDLGSGFDSLQLNAVDAEKNPGMVAGSMPSANQHGV
DYHQQMGQFDGMKVQTSMAQSFPTQGGDGSVGGVFINEQSHFQDPTMNQAPQTNGLYPNN
SPIWGERRANAYHHQRLQHQQIQQHQQQQRHKQHLRQLHFQEQFQHRQGQQRHQHQFNQQ
HSHLQQGQQVLSQHQLSAQHQLPHQQINPQTIHRHTKSYPDHTTFYYQGNVASHQGHHST
INSEGSPFHPGVDPQSKSYLDVPMIATTSQQQSGFEMAQTVQGFPGVPDTEDNNLGYHVQ
SSPAAYTLSSCSANMASSYPSSQYSFPGQPPPVVTSSQPHSTIPPGSEIGTRNSSCLFMA
DPIMEQQQKGSQIQVPGSHPQACPFRNLQPSKPVQHAYGASEMFSEGLASFSTANGPFSH
EIENNHSVSGSGFQGLVEVSLLDHQHGGIGALGEGHNILEEELLPELEAFVQEETSSWNN
TRHDEELQGRAVNDSEGEEDVDFKDSLTLRYKAQPPKNTNGSSNQARLLSPPMKSSSSSS
SSSSSSSSSSSSSSSHSSSSEKRVPKRPQQMEASSLEDKQQKANRIISEAIARARERGEK
NIPRVMSPESFPSSSDLHKHRAGSSKSRGKKGCKSARIIKSPREKQKSLIKKIVIKIGKK
KKRKTESSDELSDDEPPPRRPSKDDDSKRRSNRQIKRKRYAEEHEARLSDEEMKVIAKAK
KINANTHKEPAVQLFVENPSEEEGAVVDKIMASRMVKKEVSPGVVVEVEEFFVKYKNYSY
LHCEWATEQQLEKDKRIQQKIKRFKIKQAQRAHFFADMEEDPFNPDYVEVDRVLEVSYCE
DKDTGEPVVYYLVKWCSLPYEDSTWXXRSNTXTAXLCEYVTFLRTERPPASHWKKLEQSR
EYRNGNSLREYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLDEIHSTGIKGPFL
IIAPLSTIANWEREFRTWTHLNVIVYHGSALSRQMLQQYEMYFRDAQGRVVRGAYRFQAV
ITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMRLEHKVLLTGTPLQNT
VEELFSLLHFLEPTRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAP
KEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQANVPNLVNTMMELRKCCNHPYLIKG
AEEKILEDFREVCSPSALDFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLD
ILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQ
SMSGRDNSLGGGGTIQQQLSKKEIEDLLRRGAYGALMDEEDEGAKFCEEDIDQILQRRTK
TITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDLDTVNGRNSLVIDTP
RVRKQTRPFSATKDELAELSEGESSGDDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWG
RWRDILQHGRFKKQLTERDVEWICRALLAYCLVHYRGDDKIKSFMWDLIAPTEDGRTKEL
QNHLGLSTPVPRGRKGKKMKTQSSGFDIQKAEWIRKHNPEHMLSDDGYKKHLKHHCNKVL
LRVRMLYYLKQELIGSQCQKVLDGIEASEIQIWVPELDRSELPVMWWDTLADKCLLIGVY
KHGYEKYNTIRADSALCFLDRVGRPDEKAIAAEQRANDFMDGDGDDPEYKPAPTLLKDDM
EDDASSPGDLVITDTGGEGGSMLDGGGSSLGVVTGAYWPSSSALTARLRRLITASQRFTK
SRQILQIHQTQQSPDLCPLPPTLTDAINPKMAAKIERQQRWTRREEADFYRVVSTFGVVF
DPELGRFDWTKFRAMARLHKKTDESLHKYLCAFTAMCRRVCRLPPREGDVVDPSLSIQPI
TEERASRTLYRVELLRQIREQVLRHPQLFERLALCQPGSDLPVWWEPGTHDRDLLIGAAK
HGVSRTDYHILRDPELSFMTAQRNYSQNKGAPAQSQAQNQALLLGQTRTPTPLAQSQTPG
APPSPLTNSTPREVTPKEELLLEGEEEAGTQGWPSLRPPTPTGEGVKEEKEGENERRMEA
ARTKPLAPNPESRKQKKLSKRSRKEARRRSGSDSDSDASSSSSSSSSSSRSSSSSSSSSR
SGSSSSSSSSSCSSGSSSSSSSSSSSEESDGEEVPKNTTVVPGVKGFDEDSIASHSTTHD
DMQDSNVTNGIPNPSHPFHGGGYMLAASYWPKDRVMINRLDSICQVVLKGKWPGSRRSYE
GNAAVSSFYTTKLMDNAANLADDPAASPQGSKVKKHDADREKEFSVKINDEGSLKLTFQK
QGLPLKRPLDGEEGPLAQQQYLARLQELQSASDSSLTDYTKTQNSYQHGLSGQIRLNGMV
DGQPVIKKRRGRRKNVEGMDHLFMNKNRPTAMPDQVPPGWSGVAAQASTPGASQVAGPVD
TESRVPVINLKDGTRLAGDDAPRRKDLDQWLKEHPGFVADVGAFIPGVSKIQFQDGRPKQ
KRHRCRNPNKIDVNSLTGEERVQIINRRNARKIGGAFAPPLKDLCRFLQENPEYGIPPEW
ADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRRPKNALAKAANTANANVSAALGVNPLL
SNGLISGLDLNSLQALQSLQSFQLTAGLMGLQTDPANMAAMLPMMLSGMAGLPNLLGMSG
LLGKQEATSGEDSGKKSGGDTTAQTSEIQSERTESPSSTSASASGQALALNPLLLSSMLY
PGMLLNPGLNLPVANQPQANSPQPAPPAQPAPSDAAQKSSGQSEKDVEDEGEEPDEQKDI
SGPEGSGKAESSSSDAESSSSSSSSEDSDSTDED
NT seq
8745 nt
NT seq
+upstream
nt +downstream
nt
atggactattttggtgaccccaacattttcgaggattgttttccctcaggccatgtttct
ttggtggatgagctggaccttggctcaggttttgactctctgcagctcaatgcagtggat
gctgagaaaaaccctggaatggtggcaggttctatgccatctgctaaccagcatggggta
gactaccatcaacaaatggggcagtttgatgggatgaaagtccagacgtccatggcacag
tcttttcctacccaaggaggagacggcagtgttggaggcgttttcattaacgagcagtcc
cactttcaagacccaaccatgaatcaagcgcctcagaccaatggactgtatcccaacaac
agtcctatatggggggaacggagagcaaatgcctaccaccatcagcggctgcagcatcag
cagattcagcagcatcagcagcagcagcggcataaacaacatctgcgtcagcttcacttt
caagaacaatttcagcatcgtcaaggccagcaacgtcatcaacatcagttcaatcagcaa
cattcacaccttcaacagggtcagcaagttttgagccagcatcagctgtcagctcagcac
cagttgcctcaccaacaaattaacccccagactatacaccggcatacaaagagctatccg
gatcataccaccttctactaccaaggaaatgtcgcatcccaccaaggtcaccacagcacg
attaattcagagggaagcccttttcatccaggggttgacccacagtctaagtcttacctt
gatgtaccgatgattgccacgacctctcagcaacaaagtgggtttgagatggctcagacg
gtacaagggttccccggtgttcctgacaccgaggacaataatctagggtaccacgtacag
tcttcccctgcagcctataccctgtcttcctgttcagccaatatggcttcctcctaccct
tcctctcagtattcctttcctggtcaacctcctcctgtcgtaacttcatcacagccacac
agcaccatcccacctggttctgaaattggtactcgtaattccagctgcctattcatggca
gatcctataatggaacaacagcaaaaagggagtcagatccaggttcctggaagccatcct
caagcatgtccttttcgtaatctgcagccttcgaagccagtccagcatgcttatggtgct
tctgagatgttctcagaaggcctagcttctttctctacagcaaatggtcctttctcacac
gagatagaaaacaaccacagtgtcagtggtagtgggtttcagggtctggttgaggtctca
ttgctagatcatcagcatggaggcattggggcactaggagaaggacataatattctggaa
gaagagctgctgcctgagcttgaagcttttgttcaggaggagacgtccagctggaacaac
acaagacacgatgaagaacttcaagggagagctgtaaatgattcggaaggagaggaagat
gtggattttaaggattcactaactttgcgttataaggcacagcctccgaaaaacactaat
ggttcaagcaaccaggcccggctgctcagcccgccgatgaagagcagctcctcctcttct
tcctcctcctcctcctcgtcttcgtcttcctcgtcttcgtcctcgcactcgtcctcctcg
gagaagcgcgtccccaagcggccgcagcagatggaggcgtcgtcgctggaagacaaacag
cagaaggccaaccgcatcatctcggaggccatcgccagggcgcgcgagcggggcgagaag
aacatcccgcgtgtcatgagccccgagagtttccccagctcctccgacttgcacaagcac
agagcgggatcctctaaatccagagggaagaagggctgcaaaagcgcccgcatcatcaag
tctcccagagaaaagcagaagagtctgatcaagaaaatagtgataaagatcgggaagaag
aagaaacgcaagacggaatcttcagacgaactctcagatgacgaaccgccgcctcgacga
ccctccaaagacgacgactcgaagcgtcggtcaaacagacagataaagaggaagcggtat
gccgaggagcatgaggcccggctgtctgatgaggaaatgaaggtcatcgccaaagccaag
aagatcaatgcgaacactcacaaagagccagcagtacagctgtttgtggagaatcccagt
gaggaggaaggagctgtggtggataaaatcatggcctctcgcatggtgaagaaggaggtg
tctccaggggttgtggttgaagtggaggagttttttgtgaaatacaaaaactactcttat
ctgcattgtgagtgggctacagagcagcagctggagaaggacaagaggatccagcagaaa
atcaagcgcttcaagattaaacaggcccagagagcacacttcttcgctgatatggaggag
gatccttttaatcctgattatgtagaagtggacagagtcctagaggtctcatactgtgag
gacaaggacactggagagccggtggtgtattacctggtgaagtggtgttcgttgccgtat
gaggacagcacgtgggnnnnncgttctaatacataaacagcatgactttgtgaatacgta
acatttctcagaactgagcgccccccagcgagtcactggaagaagctggagcagtcgagg
gagtaccggaacgggaacagtctcagggaataccagctggagggcgtcaactggctgctc
ttcaactggtacaacagacgtaactgtatcttggctgacgagatgggtttggggaaaacc
atccagtcgatcacgttcttagacgagatccactccactgggatcaaagggccgttcctg
atcatcgcaccgctttccactattgctaactgggagcgcgagttccgcacgtggacccac
ctcaacgtcatcgtctatcacggcagtgcactcagccgccagatgctgcagcaatatgag
atgtacttccgagacgctcagggtcgagtggtgagaggcgcataccggtttcaggcggtt
atcaccacgtttgagatgattttaggcggctgtccggagctcaacgccatcgaatggcgc
tgcgtgatcattgacgaagctcatcgcctgaaaaacaagaactgcaagttgctggagggc
ttcaaacttatgcgcctggagcataaagtgttgttgactggcacgccgctgcagaacact
gtggaggagcttttcagtctgctgcatttcttagagcccactcggttcccctctgaaagt
accttcatgcaggagtttggagacctaaagactgaggaacaggtccagaagctgcaggcc
atactgaagccgatgatgcttcgccgcttgaaggaagacgttgagaagaagctggctcca
aaagaagagaccattatcgaggtggagctcaccaacatccagaagaaatactaccgtgcc
attttagagaagaatttctccttcctggccaaaggagccggccaagccaacgtccccaat
ctggtcaacaccatgatggagctgaggaaatgctgcaaccacccctacctcatcaaaggc
gcggaggagaagatcctggaggattttcgcgaggtgtgcagcccctcggccctggacttc
cacctgcaggccatggtgcagtccgctggcaaactcgttctcatcgacaagctgcttcct
aaaatgaaggccggcggccacaaagtgctcatcttctctcagatggtgcgctgcctcgac
atcctcgaagactacctcatccagagacgatacctctatgagcggatagacgggcgtgtg
cgcggaaaccttcgccaggctgcgattgaccgtttcagtaagcccgactcagaccgcttc
gtcttcctcttgtgcacgagagcaggaggcctgggcattaacctcactgctgctgatacc
tgcatcatctttgactcagactggaaccctcaaaatgacctgcaggcccaggctcgctgc
cacagaatcgggcagaacaaggcggtgaaggtgtaccggctcattacacgcaactcgtat
gagcgggagatgtttgacagggccagtctcaaactgggattggacaaagctgtgctgcag
agtatgagtgggcgggacaacagtctcggaggaggagggacgatccagcagcagctttct
aagaaagagattgaggacctgttgaggcgcggtgcatacggtgcgctcatggacgaggaa
gacgagggtgccaagttctgtgaggaagatatcgaccagatcctgcaacgcagaaccaaa
actatcaccattgagtcagagggacgggggtccacttttgccaaggccagttttgtagcc
tctgggaaccgcacagacatttctctggacgatcccaacttctgggataagtgggcgaag
aaggctgagatcgatctggacactgtcaacggcagaaacagcctggtgattgacacgccg
agggtaaggaaacagacgcggccgttcagtgccactaaagatgagctagctgaactatca
gaaggtgagagcagcggagacgataagcctaaattgcggcggccgcacgaccggctcaac
agttacggccgcaccgagtgcttcagggtagagaaaaacctcttagtgtacgggtggggc
cgctggagggatatcctgcagcacggccgctttaagaagcagctgaccgagagagacgtg
gagtggatctgtagagcactgctcgcctactgcctcgtgcactacagaggagacgacaag
atcaagagcttcatgtgggacctgatcgctccgaccgaggacggcaggaccaaagaactc
cagaaccacttgggactctccacgccggttcctcggggcaggaaggggaagaagatgaag
actcagtccagcgggtttgacattcagaaagccgagtggatcaggaagcacaacccggag
cacatgctgtctgatgacggatacaagaagcatcttaagcatcactgtaacaaggtgttg
ttgagagtgagaatgctgtactatctgaaacaggagctcattggttctcagtgtcagaaa
gtgctggatggaattgaagcaagtgagatacagatctgggttcctgagctggatcgttca
gagctgcctgtcatgtggtgggacacactggcagacaagtgtctgctgataggagtctac
aagcatggttatgagaagtacaacactattcgtgcagattctgctttgtgcttcctcgac
cgggtcggccggccggacgagaaggccatcgctgctgaacagagagcaaacgactttatg
gatggggatggtgacgatccggaatacaagcctgcacccactttgcttaaagatgatatg
gaggatgatgcttcctctcctggtgatctggtcataacggatacaggaggagaaggtggc
tccatgctggacggtggaggcagttctctgggagtcgtcacgggagcatactggccgtct
tcatccgccttaacagctcggctgcggcgcctgatcactgcatcacagcgcttcaccaag
agcagacagatcctgcagatccaccagacgcagcagtcccctgacctttgccccctgccc
cccacgcttacagatgccatcaaccccaaaatggctgccaagatcgagcgtcaacaaagg
tggaccaggagagaagaggcagatttctaccgcgtggtgtctacgttcggcgtcgtgttt
gatccagagctgggccgctttgactggaccaaattcagagccatggctcgcctgcacaaa
aagacagacgagagtctccacaaatacctctgtgctttcactgccatgtgcaggcgggtc
tgccgcctaccaccgagggagggtgatgttgtggatccgtctctctccatccagccgatc
acagaagagcgtgcctcacgtacactgtaccgagtggagctgctccggcagattcgggaa
caggttctgcgccaccctcagctctttgagcgcctggcgctttgccagcctggctcagat
ctgcctgtgtggtgggagccgggcactcatgaccgtgacttgctaattggtgcagccaag
catggagtgagccggacagactaccacatcctccgagaccctgagctcagcttcatgaca
gcccagaggaactacagccaaaacaagggcgcaccggcacaaagccaagcccaaaatcag
gcgctgctgcttggacagacacgcaccccaacccctttagcacagagccagactcctggg
gctccgccttcaccactaactaactccacccctagggaggttacacccaaggaggagctg
cttttagagggagaggaggaggcagggacacagggctggccttccctcaggccccccaca
cctacaggagagggggtgaaagaagagaaagaaggagaaaatgagagacggatggaggct
gcccgaacgaagccgctcgcgcccaacccagagagccgaaagcagaaaaaactgagcaag
agaagtcgcaaggaggcaaggaggaggtccgggtcagactcagattcagacgcatcttcc
tcaagctcctcatccagctcctcatcaagatcctcgtcttcatcgtcctcctcatcacgg
tcagggtccagttcctcatcctcgtcgtcttcctgctcttccggctcgtcgtcttcgtcg
tcatcgtcctcatcttctgaagagagtgatggtgaagaggttccaaagaacaccacagtg
gtgcctggcgttaaaggctttgatgaggacagcatagcatctcatagcactactcacgac
gacatgcaggacagtaacgtgactaacggcatccctaacccctcccaccccttccacggt
ggaggctacatgctcgctgcttcctattggccgaaggaccgtgttatgataaaccgactg
gacagtatttgtcaggtggtactgaagggcaagtggcccgggtctcggcgttcgtacgag
ggaaatgctgcagtgtcctcgttttacaccactaagctaatggacaacgcagccaacttg
gcagatgaccccgcagcctctcctcagggttcaaaggtgaagaagcatgatgcagacaga
gaaaaggagttctcagtcaaaataaatgacgaaggcagtctgaaactgaccttccagaag
cagggtttgccattgaagcgtcctctagacggcgaggagggacctctggcccagcagcag
tatctggctagactacaggagctgcagagtgcctctgatagcagcctgactgactacacc
aaaacacagaacagttatcaacacggcctgagtggacagatacgactgaacggaatggtt
gatggtcagccagtgataaagaagaggagaggaagaaggaagaatgtagaagggatggat
catctctttatgaacaagaacagacctactgcaatgcctgatcaggttcctccaggctgg
agtggggttgcggcccaagcctcaacccctggcgcctcacaggttgctgggcccgtggac
acagagagcagagtccctgtcataaaccttaaagacggaacacggcttgccggggatgac
gctcccagacggaaggatctagatcagtggctgaaggaacacccaggcttcgtggcagac
gtcggagccttcatcccgggggtgagtaagatacagtttcaggatggacggccgaagcag
aagaggcatcgctgtagaaatcccaacaagattgacgtcaacagcctcacaggagaggaa
agagtccaaatcatcaacaggagaaatgctcgcaagatcggtggtgcgtttgctcctcct
ctgaaggatttgtgccgattcctccaggaaaatccagagtatggaattccaccagagtgg
gcagacgttgtcaaacagtcgggctacctcccggagagcatgtttgaccggatcctcaca
ggtcctatcgtaccggaggaggtgagcagacgaggccgtcggcccaaaaacgctctggcc
aaagcggctaatacggctaacgctaacgtcagtgcagctctcggcgtcaaccctctcctg
agcaacgggctcatctccggtctggacctgaacagcttgcaggctcttcagagccttcag
agcttccagctcactgcagggctcatgggcctccagactgaccctgccaacatggctgcc
atgcttcccatgatgctctccggcatggccggcctgcccaacctactcggaatgagcggc
ctgctgggaaaacaggaagccacctctggtgaggattcagggaagaaaagcggcggggat
acgacggctcagacgtcggagatccagtcggagaggacagaaagtccaagctcaacaagt
gcttcagcctcaggccaagcgttagccctcaaccccttactgctctccagcatgctttac
ccagggatgcttctcaacccaggccttaatttacctgtggccaatcagccacaagctaac
agtcctcagcccgcccctccggctcagcccgccccctctgacgccgcacaaaaaagctca
ggccaatcggagaaggacgtggaggatgaaggggaggagcctgacgaacagaaggacatc
agtggtccagagggctcggggaaggcagagtcatcttcctcagacgcagaaagctcttca
tcatcttcgtcttcagaggactctgattcgaccgacgaagactga
DBGET
integrated database retrieval system
