KEGG   Scheffersomyces stipitis: PICST_56005
Entry
PICST_56005       CDS       T01023                                 
Name
(RefSeq) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pic  Scheffersomyces stipitis
Pathway
pic03030  DNA replication
pic03410  Base excision repair
pic03420  Nucleotide excision repair
pic03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PICST_56005
   03410 Base excision repair
    PICST_56005
   03420 Nucleotide excision repair
    PICST_56005
   03430 Mismatch repair
    PICST_56005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pic03032]
    PICST_56005
   03400 DNA repair and recombination proteins [BR:pic03400]
    PICST_56005
Enzymes [BR:pic01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PICST_56005
    6.5.1.6  DNA ligase (ATP or NAD+)
     PICST_56005
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PICST_56005
DNA replication proteins [BR:pic03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PICST_56005
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PICST_56005
DNA repair and recombination proteins [BR:pic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PICST_56005
   NER (nucleotide excision repair)
    Other NER factors
     PICST_56005
   MMR (mismatch excision repair)
    Other MMR factors
     PICST_56005
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase TrmB Presenilin
Other DBs
NCBI-GeneID: 4837358
NCBI-ProteinID: XP_001382465
JGI: 56005
UniProt: A3LP53
LinkDB
Position
2:1274321..1276540
AA seq 719 aa
MAPRQQSIGRFFGSAMSVDSLLSQTVNKSPKNQKSESLTDEQNKREAFQVSQQESEKDQE
QKPDTDPSESEPEKDKTEEIKEASELIKLSEKEHEKHVGEKLSAKIPYSKLTDVLDKIEA
ESSRLKITAIVSEFFLEILKQSTVDKLVKIVYLFINRLGPDYEPDLELGLGETILIKAIS
ECYGRPSTKIKKDYQEVGDLGLVAQKSRSGQPTMFKPAPLDVDQVFENLTKIAKSTGKDS
QAKKISLINKMLTACNAKSSEAKFLIRSLEGKLRIGLAEKTVLIGLAQAFVNYEAKDSKR
INPEKLTQSEDVVREAFSQIPNYEILIRNAYEYGIFNLLDHCQLTPGIPLKPMLAKPTKS
ISEVLDRFQGEEFTCEYKYDGERAQVHLLHDGTVRIYSRNSEDMSERYPDLISIMKDFIK
TQEGQAPSMILDCEAVAWDRVANKILPFQVLSTRKRKDVDEKDITVHICLFAFDILYFDN
EPLITKSLKERRQVMEENLTPMDGKFQFATAKNSSNLDELQQFLDQSVKDSCEGLMVKML
NGKESYYEPSKRSRNWLKLKKDYLAGVGDSLDLVVIGAYIGRGKRTGNYGGFLLASYNQD
TGEYETTCKIGTGFSDEDLASLHTKLKPTEISVPKPYYVYDTTNSNAKPDVWFEPTTIFE
VLTADLSLSPIYKAAHQEYGKGISLRFPRFLRIRDDKGIEDATSSTQVSEFYERQASVN
NT seq 2160 nt   +upstreamnt  +downstreamnt
atggcccctcgtcaacagagcattggaagattctttggatctgcaatgtcagttgacctg
ttgttatctcagactgtcaataagctgcctaaaaaccaaaaatcagaatctcttaccgat
gaacaaaacaaaagagaagctttccaagtatctcagcaagagtccgaaaaagatcaggaa
cagaagccggatacggatccaagcgaaagtgagcctgaaaaggacaaaacagaagaaata
aaagaagcatcggagttgataaagttgtcagagaaagaacatgaaaaacatgtgggagag
aagctttcagccaaaatcccctactctaagttgacagatgttttggacaagattgaagct
gaatcttcaagattgaaaataacagccatcgtctctgaatttttcctagaaatcttgaag
caatcgactgtggataaacttgtaaagattgtgtatttgttcatcaacagattggggcca
gactatgagccagacttagagcttggtcttggtgaaactatcttgatcaaggctatcagc
gaatgttacggaagacctagcaccaaaatcaagaaggattatcaagaagttggtgatctt
ggcttagtcgctcagaaatcaagatctggacaacccaccatgttcaaaccagcaccctta
gatgtagaccaggtgtttgaaaaccttacaaagattgccaaatccactggtaaggattcg
caggctaagaagatctcgttaatcaacaaaatgttgaccgcatgtaatgccaaatcttct
gaagctaaattcttgattagatctttggagggtaagttgagaatcggtcttgccgaaaag
acagtattgattggtcttgctcaagcttttgtcaactatgaagcaaaagactccaagaga
ataaacccagaaaagttgactcaatctgaagatgtagttagagaagcattttctcaaatc
ccaaactacgagatattgataagaaacgcatacgagtatggcattttcaacttgttagac
cattgccaattaacgcctggaatacctctcaagccgatgttggccaagcctacaaagtct
attagtgaagtcttggatcggttccaaggagaggagttcacatgtgagtataagtacgat
ggcgaaagagctcaggtacatcttttacatgatggcactgtaagaatctactctagaaat
tctgaggatatgtccgaaagataccctgatttgatttctatcatgaaagatttcataaag
acacaagagggtcaggctccatccatgatattggactgtgaggctgtggcctgggacaga
gttgctaacaagattttgcccttccaagtattatctacacgtaaacgtaaagatgttgat
gaaaaagatattactgtacatatttgtttgtttgcattcgacattctttattttgataat
gaacctttaattacaaagtccttgaaagaaagaagacaggtcatggaagagaacttgacg
ccaatggacggcaagttccaatttgcaactgcaaaaaactcctctaaccttgatgaatta
cagcaattccttgatcaatctgttaaagactcttgtgaaggcttaatggtgaagatgctt
aatggtaaggaatcttactacgagccttccaagagatctagaaattggttgaaacttaag
aaagattacttggcgggagttggcgattcgttagatttggtcgttattggagcttatatt
ggaagaggcaaacgtactggaaattatggtggtttcttattggcttcttataaccaggat
acaggcgaatatgaaacgacttgtaagattggtactgggttttctgacgaagatttggct
tctcttcatacgaaattgaagcctactgaaatttctgtccccaagccgtattatgtttat
gataccacgaattccaacgcaaagcctgatgtctggttcgaaccaaccacgatctttgag
gtcttgacagcagacttgtcgttgagtccaatctacaaggcagctcatcaggaatacgga
aagggtatttccttgagatttcctcgtttccttagaatcagagacgataaaggcattgag
gacgctacaagttcaacacaagtgtctgaattctacgagaggcaggccagtgttaattag

DBGET integrated database retrieval system