KEGG   Pseudomonas iranensis: HU724_017310
Entry
HU724_017310      CDS       T07894                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pie  Pseudomonas iranensis
Pathway
pie03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pie00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HU724_017310 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pie03400]
    HU724_017310 (ligD)
Enzymes [BR:pie01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HU724_017310 (ligD)
DNA repair and recombination proteins [BR:pie03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HU724_017310 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: QXI20777
LinkDB
Position
complement(3884597..3887221)
AA seq 874 aa
MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSATAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKTEKNEKTKTADKQPAKKTAASKKAETAPSQSGLAGGKVRITHPDRVIDAVSGT
TKMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITALDKDVT
GQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVEATA
LTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAV
SGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNV
HERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcagtcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctcgaactcgacggcgctttg
aagagctgggcggtgccgaaggggccgtcgctagacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggcgccggtgatgtgatcgtctgggaccgcggcgtgtggattccgctggaggatccg
cacaaggcctatgccaagggccgactgaagttcgagctgcagggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgatgtgctggttgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggcaaatcggcgactgctgccgataaagccaaa
ccggtaaaaaaggccccggccaagccgcgcaagcaggcgtccgggcagcttaccggcgcg
cgcaaggccaagctcccagcgctgatcaagccggaactggcgacgctggtcgacagcgca
cccgaagggcagtggagctacgagatcaagttcgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctattcacccgcaatggtcacgactggacgcacaagctgccg
cagcaggccaaggcactggcggcgttgggtctggaatcggcatggctcgacggcgaaatg
gtcgtggccaatgagcaaggcgtgccggactttcaggcgttgcagaatgccttcgatgcc
gggcgcagcggcaacattgtttattacttgtttgacgtgccgtatctgaatggcgtcgac
ctgcgcgatgtgccggtggaagaacgccgcgctgcgctgagcaccatcctcggtgcgcag
aaagaatcctcaacgctgcgcttctccgaagccttcgaagaaaccccggacgcgctgctc
aacagcgcttgccagatgcagatggaaggcctgatcggcaaacgcctcggctcgccttac
gtgtcgcggcgcagcggcgactggatcaagctcaaatgcaagcatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgccttcggtgcgttgctgctcggc
ctgcacgaccgtgacagcggcgagttgcgctatgccggcaaggtcggcaccggtttcaac
gaaaccacattgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgccgca
gtggtcaatccgcccagcggtttcgaggccaaaggcgtgcactggctcaagccgaaattg
ctggcggaggtggcgttcgccgagatgaccaaggacggctcggtgcgccacgccgtattc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaagaccgaaaaaaacgaaaaaaccaaaaccgccgacaagcag
ccggcaaagaaaaccgccgccagcaaaaaggccgagaccgcaccgtcgcaatcaggactg
gccggcggcaaagtacgcatcacccatccggatcgggtgattgacgcggtcagtggcact
accaaaatgcaactggcgcagtactacgccagtgtcgccgaatacatcctgccgcaactc
aaggatcgccccgtggcgctggtgcgtgcaccggacggcatcgccggcgaattgttcttc
caaaagaacgccgaacgcctggccattcccggtatcactgctctggacaaggacgtcacc
ggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtgcagatgagc
accgtcgaactgcacacctggaacgctacaaaggtggatctggacaagcccgatcgcttc
gtcctcgacctcgacccggatccggcgctgccatggaaaagcatggttgaagccaccgcg
ctgaccctcaccgtgctcgatgagttgggcctcaaagccttcctgaaaaccagcggcggc
aaaggcattcacttggtggtgccgttgacgcgcaagcatggctgggacgaagtgaaggac
ttcagccacgccatcgtcagccatatggccaagttgctgccggatcgtatttcagcggtg
tccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaacggcctcggc
gccaccaccatttgcgcctacgccgcacgggcgcgggaaggcatgccggtgtcggtgccg
ctgtaccgagaggaagtcgctgaaatcaagggcggtaatcactggaacatctacaacgtt
cacgagcgtctgaccgaagtcggtgatgagccttgggcggacatgaagaaaacccgccag
accatcaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga

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