Pseudomonas iranensis: HU724_017310
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Entry
HU724_017310 CDS
T07894
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pie
Pseudomonas iranensis
Pathway
pie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU724_017310 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pie03400
]
HU724_017310 (ligD)
Enzymes [BR:
pie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU724_017310 (ligD)
DNA repair and recombination proteins [BR:
pie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU724_017310 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXI20777
LinkDB
All DBs
Position
complement(3884597..3887221)
Genome browser
AA seq
874 aa
AA seq
DB search
MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSATAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKTEKNEKTKTADKQPAKKTAASKKAETAPSQSGLAGGKVRITHPDRVIDAVSGT
TKMQLAQYYASVAEYILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITALDKDVT
GQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVEATA
LTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRISAV
SGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNIYNV
HERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcagtcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctcgaactcgacggcgctttg
aagagctgggcggtgccgaaggggccgtcgctagacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggcgccggtgatgtgatcgtctgggaccgcggcgtgtggattccgctggaggatccg
cacaaggcctatgccaagggccgactgaagttcgagctgcagggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaagaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgatgtgctggttgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggcaaatcggcgactgctgccgataaagccaaa
ccggtaaaaaaggccccggccaagccgcgcaagcaggcgtccgggcagcttaccggcgcg
cgcaaggccaagctcccagcgctgatcaagccggaactggcgacgctggtcgacagcgca
cccgaagggcagtggagctacgagatcaagttcgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctattcacccgcaatggtcacgactggacgcacaagctgccg
cagcaggccaaggcactggcggcgttgggtctggaatcggcatggctcgacggcgaaatg
gtcgtggccaatgagcaaggcgtgccggactttcaggcgttgcagaatgccttcgatgcc
gggcgcagcggcaacattgtttattacttgtttgacgtgccgtatctgaatggcgtcgac
ctgcgcgatgtgccggtggaagaacgccgcgctgcgctgagcaccatcctcggtgcgcag
aaagaatcctcaacgctgcgcttctccgaagccttcgaagaaaccccggacgcgctgctc
aacagcgcttgccagatgcagatggaaggcctgatcggcaaacgcctcggctcgccttac
gtgtcgcggcgcagcggcgactggatcaagctcaaatgcaagcatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgccttcggtgcgttgctgctcggc
ctgcacgaccgtgacagcggcgagttgcgctatgccggcaaggtcggcaccggtttcaac
gaaaccacattgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgccgca
gtggtcaatccgcccagcggtttcgaggccaaaggcgtgcactggctcaagccgaaattg
ctggcggaggtggcgttcgccgagatgaccaaggacggctcggtgcgccacgccgtattc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaagaccgaaaaaaacgaaaaaaccaaaaccgccgacaagcag
ccggcaaagaaaaccgccgccagcaaaaaggccgagaccgcaccgtcgcaatcaggactg
gccggcggcaaagtacgcatcacccatccggatcgggtgattgacgcggtcagtggcact
accaaaatgcaactggcgcagtactacgccagtgtcgccgaatacatcctgccgcaactc
aaggatcgccccgtggcgctggtgcgtgcaccggacggcatcgccggcgaattgttcttc
caaaagaacgccgaacgcctggccattcccggtatcactgctctggacaaggacgtcacc
ggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtgcagatgagc
accgtcgaactgcacacctggaacgctacaaaggtggatctggacaagcccgatcgcttc
gtcctcgacctcgacccggatccggcgctgccatggaaaagcatggttgaagccaccgcg
ctgaccctcaccgtgctcgatgagttgggcctcaaagccttcctgaaaaccagcggcggc
aaaggcattcacttggtggtgccgttgacgcgcaagcatggctgggacgaagtgaaggac
ttcagccacgccatcgtcagccatatggccaagttgctgccggatcgtatttcagcggtg
tccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaacggcctcggc
gccaccaccatttgcgcctacgccgcacgggcgcgggaaggcatgccggtgtcggtgccg
ctgtaccgagaggaagtcgctgaaatcaagggcggtaatcactggaacatctacaacgtt
cacgagcgtctgaccgaagtcggtgatgagccttgggcggacatgaagaaaacccgccag
accatcaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga
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