Paenibacillus sp. IHBB 10380: UB51_20575
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Entry
UB51_20575 CDS
T03836
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pih
Paenibacillus sp. IHBB 10380
Pathway
pih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UB51_20575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pih03019
]
UB51_20575
03009 Ribosome biogenesis [BR:
pih03009
]
UB51_20575
Enzymes [BR:
pih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UB51_20575
Messenger RNA biogenesis [BR:
pih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UB51_20575
Ribosome biogenesis [BR:
pih03009
]
Prokaryotic type
rRNA helicases
UB51_20575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJS60451
UniProt:
A0A0D3VFU4
LinkDB
All DBs
Position
complement(4522290..4523999)
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AA seq
569 aa
AA seq
DB search
MPKFQDLGISPELVKVLQVQGITEPTPVQHEAIPLLLAGRDVIARARTGTGKTLAFMLPI
MMKIDPNRQYPQALIVAPTRELALQITEEARKLARNTDVKILAVYGGQDVDKQLRKLEGG
RHLIIGTPGRLLDHLGRGTLDLNGVKMLVLDEADQMLHMGFLNDVETLIQALPYRRQTML
FSATMPAEIKRIAAAYTTDAEDIIIKGENSLVPLEHIRQVVVECSDRLKQSALFSMLNEY
NPYLAIIFCRTKRRAKMINEALIDAGYNSDELHGDLSQGKREGVMKKFREAKIQLLVATD
VAARGLDVEGITHIFNYDIPHDVESYIHRIGRTGRAGDKGVAITLADPKDKPEVQRIELE
IRHKIEKMRYENIDGVGEVKKMGTGSSSGKKSRSDSEGGRGRRDDRSGGGRRGEARGGSS
RGGEARGGSGRVGEARGGSGRVGEARGGSSRGGEARGGSSRVGEARGGSSRVGEARGGSG
RVGEARGGSSRVGEARGGSGRVGEARGGSSRVGEARGGSSRGGEARGGSSRVGEARGGSS
RGGEARGGSSRGGNSRGGYAGGKGRPRSK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgccgaaatttcaagacttaggcatatcgccagaactagttaaagttcttcaagtgcaa
gggattaccgaacctacgcctgtacagcatgaagcaattccgttgttgttagcaggtcgt
gatgtcattgcccgtgctcgtactggaacagggaagacgcttgcgttcatgttacctatc
atgatgaagattgacccaaaccgtcaatatccacaagctttaattgtagctccgacacgt
gagctagcactacagattacggaagaagcgcggaagcttgcacgcaacacagacgtcaaa
attcttgctgtctatggtggacaagatgtagataaacagttgcgtaagcttgaaggtgga
cgtcatctgatcattggtacaccggggcgtttactagatcacttaggacgcggaacactt
gacttaaacggagtcaaaatgctcgtacttgatgaagcagatcaaatgctacatatggga
ttcctgaatgatgttgagacgctgattcaggcgttgccatatcgtcgtcaaacgatgtta
ttctcagctacaatgcctgcggagattaaacggattgcagcagcttatacgacagatgcg
gaagacattattatcaaaggggagaattcccttgtaccgcttgaacatatccgtcaagtg
gttgtggagtgttcggatcgattgaaacaatcagcgttgtttagcatgctgaatgaatat
aacccgtatttagctattattttctgtcgtacgaaacgccgtgcaaagatgattaacgaa
gcacttattgatgctggttacaattcggacgagcttcatggggatctttcgcaaggtaag
cgtgaaggtgttatgaagaaattccgcgaagccaaaatccaattgctcgtagctacggat
gtggcggcacgtggtttggacgttgagggtattacacatatattcaactatgatattcct
catgatgtggagagttatatccaccgcatcggtcgtacaggccgcgcaggtgataagggt
gtagcgattactttggcagatcctaaggataagccggaagtacagcgtattgagcttgag
atccgccacaaaatcgaaaaaatgcgttatgagaatatcgatggtgttggtgaggttaag
aagatgggcaccggatcttcttcgggtaagaaatcgagaagcgatagcgaaggtggtcgc
ggtcgtagagatgatcgcagcgggggcggtcgcagaggcgaagcacgcggaggaagtagc
cgcggaggcgaagcacgcggaggaagtggtcgcgtgggcgaagcacgcggaggaagtggc
cgtgtaggcgaagcacgcggaggaagtagccgcggaggcgaagcacgcggaggaagtagc
cgtgtaggcgaagcacgcggaggaagtagccgtgtaggcgaagcacgcggaggaagtggc
cgtgtgggcgaagcacgcggaggaagtagccgtgtgggcgaagcacgcggaggaagtggc
cgcgtgggcgaagcacgcggaggaagtagccgcgtgggcgaagcacgcggaggaagtagt
cgcggaggcgaagcacgcggaggaagtagccgcgtgggcgaagcacgcggaggaagtagt
cgcggaggcgaagcacgcggaggaagtagccgcggaggtaattcacgcggtggttatgct
ggcggaaaaggtcgtccgcggagcaagtag
DBGET
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