Pyrobaculum islandicum: Pisl_0836
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Entry
Pisl_0836 CDS
T00444
Name
(GenBank) ribosomal RNA-processing protein RRP41/SKI6
KO
K11600
exosome complex component RRP41
Organism
pis
Pyrobaculum islandicum
Pathway
pis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pisl_0836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pis03019
]
Pisl_0836
Messenger RNA biogenesis [BR:
pis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Pisl_0836
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Pisl_0836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ABL88012
UniProt:
A1RST0
LinkDB
All DBs
Position
complement(749517..750257)
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AA seq
246 aa
AA seq
DB search
MKKPPVPLFQNGVRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMH
PRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSR
IDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQY
GEGDLPVGYMPNLKRFTLLQLDGAWTRDKFLEALNLAIKGAEFVYQKARDALKSKYMTIA
EDIYGR
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacctcctgtgccattgtttcaaaacggtgtaagagctgatggaagagctcct
gaccaaatgagggaggtaaacattacagttggtattgtcagtaacgcggatggttctgct
atggtctcctacggcgcaactactgctgtggccgccgtatacgggcctagagaaatgcat
ccacgacatctttctttaccagatagaggagtgatgcgtgttagatatcacatggcgccg
tttagtacaaaagatgaacgtaagagcccaacacccactagacgagagattgagattagt
aaaatcttgagagaagccttggaacccgcggtcgtattagagcaataccctaggtctagg
atagatgtctttatcgaaattcttcaagcagacggctctacacgagttgcctcgcttact
gccgcgtcgctagctcttgcagatgctggtgtgtatatgagagatctcgtaataggagtg
tctgtggggcttgtagatggcgcggtagtactcgatttaaatggtctcgaggatcagtat
ggcgagggggacctccccgtgggctatatgccgaacttaaagaggttcaccctactccaa
ttagatggagcttggacaagagacaagtttctagaggctcttaaccttgctattaaaggt
gccgagtttgtatatcaaaaagctcgtgacgcgctaaagagcaaatatatgacaatagct
gaggatatctacgggaggtaa
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