KEGG   Pyrobaculum islandicum: Pisl_1115
Entry
Pisl_1115         CDS       T00444                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pis  Pyrobaculum islandicum
Pathway
pis03030  DNA replication
pis03410  Base excision repair
pis03420  Nucleotide excision repair
pis03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pis00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pisl_1115
   03410 Base excision repair
    Pisl_1115
   03420 Nucleotide excision repair
    Pisl_1115
   03430 Mismatch repair
    Pisl_1115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pis03032]
    Pisl_1115
   03400 DNA repair and recombination proteins [BR:pis03400]
    Pisl_1115
Enzymes [BR:pis01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pisl_1115
    6.5.1.6  DNA ligase (ATP or NAD+)
     Pisl_1115
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Pisl_1115
DNA replication proteins [BR:pis03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Pisl_1115
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Pisl_1115
DNA repair and recombination proteins [BR:pis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Pisl_1115
   NER (nucleotide excision repair)
    Other NER factors
     Pisl_1115
   MMR (mismatch excision repair)
    Other MMR factors
     Pisl_1115
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: ABL88286
UniProt: A1RTK4
LinkDB
Position
1013610..1015364
AA seq 584 aa
MQFGELVKTLAAVESTTQRTTMVKLLTSLFKKARPEEIDKIIYFVLGDLRPPWEGVELGV
AEKLCLRAVSKATGVSISELEALYKKTGDVGEAARKALSTAKRPGLLAFGQQKPLEVSEV
YDTLLKVAQASGEGAQDMKISLLASLFAKASPEEAKYIARFVVGKLRLGVADMTLIEALS
DAFGVDKEALERAYHIYPDLGKLARHVAEGRPLEEIKITPGVPVLPMLAQRLSSSSEILA
KLGGSAICEYKYDGERAQIHLKEGVVKIFSRRLEDITHAYPDVVKAVREAVSAREAILEG
EIVAIDPDTGDMLPFQELMHRKRKHEVAVAVEMYPVVLNLFDLLYIDGEDLTNEPLIYRR
VRLSEVVQETEKVSIAKWRVFDDAEEIDVFFHEAVSLGMEGLVCKSPTSVYEMGARGWNW
IKYKRDYKSEMIDTVDLVVVGAFYGRGKRAGLYGAFLLAAYDPATDMFYTVCKVGSGFTD
ADLKKMYEMLQPYKIPHRHPRVVSKMEPDVWFTPQVVIEVIGAEITLSPLHTCCLGAVKP
GVGLAIRFPRFTGRYRTDKSPEQATTVSEMIELYKRQKKVAQPE
NT seq 1755 nt   +upstreamnt  +downstreamnt
gtgcagtttggagaacttgtcaaaactctagccgccgtagagtctaccacccagaggacc
actatggttaagcttttaacttctctttttaagaaggcgcggcctgaggaaatagataaa
ataatctactttgtcttaggcgatttaagacccccgtgggagggggtggagctgggggtt
gcggagaagttgtgtcttagggcggtttctaaagcgacgggagtttctatatctgaactc
gaggcgctttataaaaagacgggcgacgtaggagaggcggctagaaaagcgctgtcaaca
gccaagcgccctggtctcttggcctttggccaacaaaagccgctggaggtgtctgaagta
tatgacacacttcttaaagttgcgcaagcgtctggagagggggcgcaggacatgaagatc
tctctattggcgtcgctttttgcaaaagcctcgccagaggaggctaaatatatcgctaga
tttgtcgtaggcaaactaaggctgggtgttgcagatatgacgttgatagaggcgttgtct
gacgcctttggcgtagataaagaggctctagagagggcttaccacatttatccagacttg
ggcaaactggcgcgccacgtggcagaagggaggccgcttgaggagattaaaattacgccg
ggcgtgcccgtcctcccaatgttggcgcagagactttcctcctcttctgagattttagct
aaactggggggctctgccatatgtgaatataaatacgatggggagagggcgcagatccat
ctaaaagagggcgttgtgaagatattcagtaggagacttgaagatattacacacgcctac
ccagacgtagttaaagctgtgagagaggctgtctcagctagagaggctatcttagagggg
gagattgtagctatagaccccgacacaggcgatatgctgccgtttcaagaacttatgcat
agaaagagaaaacacgaggtggctgttgcagtggagatgtacccagtggttctcaacctc
tttgacctactgtatatagatggcgaggatttaacaaacgagcctcttatatatcgtaga
gtgagactgtcggaggttgtacaagagacggagaaggtgtcgatagctaagtggagggtt
tttgacgacgcagaggagatagatgtgtttttccacgaggccgtctctctaggcatggag
ggcctcgtttgtaaatcgcctacgtcggtatatgaaatgggggccagggggtggaactgg
attaaatacaagagagattacaaaagcgagatgatagacacagtagatttagtagtagta
ggcgctttctatggcagaggaaaacgcgccgggctctacggcgcttttctcctcgcggcg
tatgacccagccacagacatgttttacacagtctgtaaagtggggagcggatttacagac
gccgaccttaaaaaaatgtacgagatgttgcagccgtataaaataccacatagacatccg
agagttgtctctaagatggagcccgacgtttggtttacgcctcaggttgtaattgaagtc
atcggcgcggagattacgctgtcgcctctccacacttgttgtctaggggctgtaaagccg
ggggtcggcctggccattagattcccaagatttacaggccgctataggacagataaatcg
cctgaacaagccacgactgtgtctgagatgatagagctctataagagacagaaaaaggta
gctcagcccgagtag

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