Pseudomonas inefficax: RIN61_25275
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Entry
RIN61_25275 CDS
T09811
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RIN61_25275 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_25275 (ligD)
Enzymes [BR:
pix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RIN61_25275 (ligD)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RIN61_25275 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WNN39461
LinkDB
All DBs
Position
complement(5624626..5627121)
Genome browser
AA seq
831 aa
AA seq
DB search
MAKPLQEYARKRDFNATPEPSGKRSRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAREA
YAKGKLRFRLQGEKLGGVWNLFRTHLAGKKEQWMLVKSHDGQARSEADYSIVDAQPDSVL
SDRTLVPRKPAAKKAAAPRRKAPSKGQKVPLPEQLQPQLATLVDSPPNGDWRYEVKFDGY
RILARIDGNDVRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEVVVADDNGSADFQAL
QNAFDTENDEHITYYLFDLPFLGGQDLRQLPLQDRRNTLQHLLEHNESDLLKYSADFDQP
VESLLDSACRLQLEGLIGKRVDSPYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFG
ALLLALHDNGSGELRYAGKVGTGFSATTLASIHARLKPLEIARPALPNPPTGAEARGVHW
LKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERSMPAKTLPTRKQAKAPEAL
GELRLTHPERVVDATSGVTKREVAEYYAAVSQWIMPQLKDRPVALVRAPDGLAGELFFQK
NAGQLHLPNVLSYDKAEAGQAAMVINRADTLLGAVQMNMLELHTWNATDKDFDKPDRFVL
DLDPDPALPWKAMLEATQLALTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKAFS
HGIVDYLARLFPERLSAVSGPKNRIGRIFIDYLRNGKGATTACAYSLRAREGLPVSVPIW
REELPQLKSANQWNIGNVLERLGDVDDPWADYAKTRQSITVGMRKQLGLAR
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatatgcacgcaagcgcgacttcaatgccacgcccgagccc
agcggcaagcgcagccgtggcaagcgggcccacgcactgcagttctgcatccagaagcac
gatgccagccacctgcattacgactttcgcctggaactcgatggcacgctgaaaagctgg
gccatccccaaagggccgtcgctggaccccaaggtgcgccgcctggccgtgcacgtggag
gaccacccgctggactacgccgacttcgaaggccatatccccgaaggccattacggtgca
ggcgatgtgatcgtctgggaccggggcatctgggagcccgaaggcgatgcgcgcgaggcc
tatgccaagggcaagttgcgtttccgcctgcaaggcgaaaagctcggcggtgtatggaac
ctgttccgcacccacctggccggcaagaaggaacagtggatgctggtcaagtcgcacgac
ggccaggcgcgcagcgaagccgactacagcattgtcgacgcccagcccgacagcgtgctc
agcgaccgcacgctggtgccgcgcaaaccggcagcaaaaaaggccgccgcgccacgtcgc
aaagcccccagcaaaggccagaaggtgccgttgccggagcagttgcagccacaactggcg
accttggtcgactccccgcccaatggtgactggcgctacgaggtcaagttcgacggttat
cgcatccttgcccgcatcgacggtaatgatgtgcgcctgttcacccgcaatggtcatgac
tggagcagcaagatgccccggcaggttgccgccttgcgtgcgctgggcatcgattcggcc
tggctcgacggcgaggtagtggtggccgacgataatggctcggcggacttccaggcgctg
cagaacgccttcgacaccgagaatgacgagcacatcacctattacctgttcgacctgccc
ttcctcggcggccaggacctgcgccagttgccgctgcaggaccggcgcaacaccttgcag
cacttgctggaacacaacgaatcggacctgctcaagtactccgccgactttgaccagccc
gtcgaatccctgctcgacagtgcctgccggctgcaactcgaaggcctgatcggcaagcgc
gtcgacagcccctacagtgggcgccgcagccccgactggatcaagctcaagtgcaagcaa
cgccaggagttcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggtttcggt
gccctgctgttggccttgcacgacaacggcagcggcgagttgcgctatgccggcaaggtc
ggcaccggcttcagtgccaccactctggccagcatccatgcccggctgaaacccttggaa
atcgccaggccggccctgcccaacccgcccaccggggccgaagcccggggcgtgcactgg
ctgaaaccgcaactgctggccgaagtcgcctatgcccagatgacccgtgacggcatcgtg
cgccattcggtgttccacggcctgcgcgatgacaaaccggctaccgccatcgacctggag
cgcagcatgcctgccaagaccctgcccacgcgcaagcaggccaaggcccccgaggccttg
ggcgagctgcgcctgacccaccccgagcgggtggtcgacgccaccagcggcgttaccaag
cgcgaagtcgccgagtactacgccgccgtcagccagtggataatgccccaactcaaggac
cgcccggtcgcgctggtgcgcgcgccggacggcctggccggggagctgttcttccagaag
aacgccggtcagctgcatctacccaacgtgctcagttacgacaaggccgaggccggccag
gcggcgatggtcatcaaccgcgccgacaccttgctgggtgctgtgcagatgaacatgctc
gagctgcacacctggaacgccaccgacaaggacttcgacaagcccgaccgcttcgtcctc
gacctcgacccggacccggcactgccgtggaaggccatgctcgaggccacccaactggcc
ctgacgcttctggatgaactgggcttgaaggtattcctcaagaccagtggcggcaaaggc
atgcacctggtcgtcccgctgacccggcgggcgggctgggatgaagtcaaggcgttcagc
cacggcatcgtcgattacctggccaggctgttccccgaaaggctcagtgccgtgtccggg
cccaaaaatcgcatcgggcgcatcttcatcgactacctgcgcaatggcaaaggcgcgacc
accgcctgcgcgtattccctgcgcgcccgcgaaggcctgccggtatccgtgccgatctgg
cgcgaggaactgccgcaactcaagagcgccaaccagtggaacatcggcaacgtgcttgaa
cgcctgggcgatgtggacgacccctgggccgattatgccaagacaaggcaatcgatcacc
gtaggcatgcgcaagcaactggggctggcccggtga
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integrated database retrieval system
