Pseudomonas juntendi: L1P09_13090
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Entry
L1P09_13090 CDS
T08267
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L1P09_13090 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pju03400
]
L1P09_13090 (ligD)
Enzymes [BR:
pju01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L1P09_13090 (ligD)
DNA repair and recombination proteins [BR:
pju03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L1P09_13090 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UJM10299
LinkDB
All DBs
Position
2819539..2822040
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AA seq
833 aa
AA seq
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MAKPLQEYARKRDFNATPEPSGKRSRGKKAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPNVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEG
YAKGKLKFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDAQARSEAEYSIVDAQPDSVL
SDRTLIPRKPAARQAATKPRATRKRPGKVRQAALPNQLQPQLATLVDTPPQGDWRYEVKF
DGYRILARIDGDDVRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGAADF
QALQNAFDTEQDEHITYYVFDLPFLGGQDLRHAPLQDRRETLKTLLDHDASDVLKYSADF
DEPVDALLASACRLELEGLIGKRADSPYSGRRSADWIKLKCKRRQEFVLVGYTDPKGSRS
GFGALLLALHDPDNGELRYAGKVGTGFTAATLASIHTRLQPLEIAKPAVARPPSGAEARG
VHWLKPQLLAEVAYAQMTRDGIVRHSVFHGLRDDKPATAIDLERPMPTNTTPRRKRGKAA
PLSEDLHLTHPDRVIDATTGVTKRDVAEYYAAVSQWLLPQIQHRPVALVRAPDGLAGELF
FQKNASQLHLPNVLEYDKAQAGQAAMVINRADTLLGAVQMNMLELHSWNATDKDFDKPDR
FVLDLDPDPALPWKAMLEATQLTLTLLDELGLKVFIKTSGGKGIHLVVPLTRRAGWDEVK
AFSHAIVEYLAKLFPDRLSAVSGPKNRIGRIFIDYLRNARGATTACAYSLRAREGLPVSV
PIWREELTALKAANQWNIANLPARLAEVDDPWADLGKVRQSITARMRKQLGLA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgcaacgcccgagccc
agtggcaaacgcagccgtggcaaaaaagcccatgcgctgcagttctgcattcagaaacac
gacgccagccacctgcattatgatttccgcctggagttggacggtacgttgaagagctgg
gcgatccccaaaggcccgtcgctggacccgaacgtgcgccgcctggccgtgcacgtcgag
gaccacccgctggactatgccgatttcgagggccacatccctgaaggccactacggggct
ggcgatgtcatcgtctgggatcgcggcatctgggagccggagggcgacgcccatgagggc
tatgccaagggcaagctcaagtttcgtttgcaaggcgaaaaactgtccggggtgtggaac
ctgttccgcacccacctggcgggcaagaaagaacaatggatgctggtcaaatcccacgat
gcccaggcccgtagcgaagccgagtacagcatcgtcgacgcgcagcccgacagtgtgctc
agtgaccgcaccctgatcccccgcaagccggcagccaggcaagccgccaccaagccgcgg
gctacgcgcaagcgccccggcaaggttcgccaagccgcattgccgaaccagttgcagcca
cagctggccaccttggtggacacgccgccccagggcgactggcgctatgaggtcaagttc
gatggctatcgcatcctggctcgtatcgacggcgacgatgtgcggctattcacccgcaac
ggccatgactggagcagcaagatgccccgccaagtcgcagcattgcgcgccctgggcatc
gattcggcctggctggatggcgaaatggtagtggctgacgaaaatggcgcagcggacttc
caggcgttacagaacgccttcgacaccgagcaggacgagcacatcacttactacgtattc
gacctgccctttctgggtggccaggacctgcgtcacgcaccgctacaggatcgccgcgaa
acgctgaaaaccctcctcgatcacgacgcgtcagacgtactcaaatattccgccgacttc
gacgaaccggtcgacgccctgctggccagcgcctgccgcctggaactcgaagggctgatc
ggtaaacgtgcagacagcccctacagcggccgccgcagcgcggactggatcaagctcaaa
tgcaagcgccgccaggagttcgtgctggttggctacaccgaccccaaaggcagccgcagc
ggcttcggggccctgctgctggccctgcacgacccggacaatggcgagctgcgctatgcc
ggcaaggtcggtaccggcttcacggctgccaccctggccagcatccatacgcgcctgcag
ccacttgaaattgccaagcccgccgtggcccgcccgcccagcggcgcagaagcccgcggt
gtgcactggctgaagccgcagctgctggctgaagtggcgtatgcccagatgacccgggac
ggcattgtgcgccattcggtcttccatggcctgcgcgatgacaagcccgccaccgccatc
gacctggaacgccccatgcccaccaacacaacgccccgccgcaaacgcggcaaagcagcg
ccactttcggaggacctgcaccttacccaccctgaccgggtgatcgacgctaccacgggc
gtgaccaagcgcgatgtggccgagtattacgccgccgtcagccagtggttgctaccccag
atccagcaccgcccggtggcattggtgcgggcacccgatggcctggccggtgagcttttc
ttccagaagaacgccagccagctgcacctgcccaatgtgctcgaatacgacaaggcccag
gccggccaggcggccatggtcatcaaccgcgccgataccctgctgggcgcggtgcagatg
aacatgctcgagctgcacagctggaatgccactgacaaggacttcgacaagcccgaccgc
ttcgtgctcgacctcgaccctgaccccgcgctgccctggaaggctatgctggaagccact
caactcaccctcaccctgctcgacgagcttggcctgaaagtgttcatcaagaccagcggc
ggcaagggcatacacttggtggtaccgctgacccgccgcgcgggttgggacgaggtcaaa
gccttcagccatgccatcgtcgagtacctggccaagctgtttccggaccgcctcagcgct
gtttcagggcccaagaaccgcatcgggcgcatcttcatcgactatctgcgcaacgccagg
ggggcaacaaccgcgtgtgcctattccctgcgtgcacgggaaggcctgccggtgtcggtg
cccatctggcgtgaggaactgaccgcgctcaaagccgccaaccaatggaacatcgccaac
ctgcccgcgcgcctggcagaggtcgacgacccgtgggcggacctgggcaaggtccgccaa
tccattacggcgcgcatgcgcaaacagctggggcttgcctag
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