KEGG   Pseudomonas knackmussii: PKB_3948
Entry
PKB_3948          CDS       T03081                                 
Name
(GenBank) putative ATP-dependent DNA helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pkc  Pseudomonas knackmussii
Brite
KEGG Orthology (KO) [BR:pkc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pkc03400]
    PKB_3948
Enzymes [BR:pkc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PKB_3948
    5.6.2.6  RNA 3'-5' helicase
     PKB_3948
DNA repair and recombination proteins [BR:pkc03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    PKB_3948
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII Lhr_WH DprA_WH AAA_25 PhoH
Other DBs
NCBI-ProteinID: CDF85277
UniProt: A0A024HL67
LinkDB
Position
complement(4143147..4147478)
AA seq 1443 aa
MTRLAAASTPAEVLQGFHPAVAAWFIRHFAAPTAAQVQAWPSIRAGRSTLVAAPTGSGKT
LTAFLSAIDQLVREGLANGGELPDRTSVVYVSPLKALSNDIRINLEEPLAGIREELERMG
LPAVDIRTAVRTGDTSQGEREAMRRRPPHILVTTPESLYVLLGSESGRQMLGGARSVIVD
EIHALAGSKRGSHLALSLERLQALCAEPLVRIGLSATQKPIEAVAEFLCGMADCRIVDIG
YSRARDLAIEVPPAPLEAVMSHEVWDSVYDRLAALAEEHRTTLVFVNTRRLAERITRHLG
ERLGIEKVAAHHGSLSKEQRLGAEQRLKAGRLKVLVATASLELGIDIGDVELVCQIASPR
SIASFLQRVGRSGHSVGGTPKGRLFPTSRDELIECVALLDSVRRGELDALSIPHAPLDVL
AQQIVAEVACREWREDELFQLLTRAQPYADLSRERFDALLRMLVDGYTSRNGQRGAYLHR
DGVHGLLRGRRGARLTAVTSGGTIPDTGDYQVLLEPQGLTVGTVNEDFAVESLAGDVFQL
GNQSYRILRIEPGKVRVEDAQGQPPNIPFWLGEAPGRSDELSASVSRLRERLDGLLAEAL
GGAEPLQPAMAWLENELGLNEAAARQLVEYLARARAALGVLPSQSALVLERFFDESGGMQ
LVIHSPYGSRVNRAWGLALRKRFCRTFNFELQAAATEDAIILSLSTSHSFPLDEVWRYLN
ANTAEQVLVQALLDAPLFGVRWRWNATTSLALPRYRGGRKVAPQLQRMRSEDLLASVFPD
QVACLENIVGERQIPDHPLVAQTLDDCLHEAMDTEAWLALLRRMEHGEVALYARDLPAPS
PLAAEVLSASPYAFLDDAPLEERRTQAVLSRRWSDPESSDDLGALDPEAITAVRAEAWPE
ARDPDEMHEALSGLGCIRADEACENQGWELLLGRLAKSGRATRLRSGEADLWVAAERLCQ
VLAVYPQARLTPELQLPMALQEGWSAEDALLELLRARLTGFGPRTQRQMVEDLALPAADI
AFALAGLEREGYVLRGRFSPDAGEEEWCERHLLARIHRYTVRRLRREIEPVERADFMRFL
FDWQRVSKSSQVRGAEALAGVLSQLEGFQAAAGAWESELLPARVADYGINWLDDLCRAGR
LVWARLPSRATLRGRSGGGPLRSTPIVLLPRRELPLWSALCADAPEAELSSKAQKVLQAL
QTHGALFFDELSSEAHLLRSELEMALGELVAVGRVNADSFAGLRALLLPAAKRSRQERRA
RTPLFGMADAGRWALLRKPSVELAAGQPQRLASEVLEHVAMTLLRRYGVVCWRLLAREAD
WLPPWRDLLRVYHRLEARGEIRGGRFVAGLTGEQFALPEAVGLLREVRRREKDGEYVVLS
AVDPLNLAGTLLPGSKVPTVLGNRVIYKDGVALGALIAGKPVLWVELPREEEARVRELLI
RRI
NT seq 4332 nt   +upstreamnt  +downstreamnt
atgactcgactcgccgccgcttccacacccgccgaggtgctgcagggtttccaccccgcg
gtcgcggcctggttcatccgccatttcgccgcgccgaccgccgcccaggtccaggcctgg
ccgtcgatccgcgccgggcgctcgaccctggtggcagcgcccaccggttcgggcaagacg
ctcaccgccttcctctcggccatcgaccagctggtgcgcgaaggcctggccaatggcggc
gagctgccggacagaaccagcgtggtctacgtctcgccgctcaaggcgctgtccaacgac
atccgcatcaacctcgaggaaccgctggccggcatccgcgaggagcttgaacgcatgggc
ctgccggctgtggatatccgtacggcggtgcgcaccggcgacaccagccagggcgaacgc
gaggccatgcgccggcgcccgccgcacatcctggtgaccacgccggagtcgctctacgtg
ctgctcggctcggaatccgggcggcagatgctgggcggcgcgcgcagcgtcatagtcgac
gagatccacgccctggccggcagcaagcgcggcagccacctggcgttgtcgcttgagcgc
ctgcaggcgctgtgcgccgaaccgttggtgcgcatcgggctgtcggccacgcagaagccc
atcgaggcggtggcggaattcctctgcggcatggccgattgccgcatcgtcgatatcggc
tacagccgcgcgcgcgatctcgccatcgaggtgccgccggcgccactggaggcggtgatg
tcccacgaggtctgggacagcgtctacgaccgcctcgccgcgctggccgaggagcaccgc
accaccttggtgttcgtgaatacccggaggctggccgaacgcatcacccgtcacctgggc
gagcgcctggggatcgaaaaagtggccgcgcaccacggcagcctgtccaaggaacagcgc
ctgggcgccgagcagcggctcaaggctggtcgcctcaaggtgcttgtagccaccgcttcg
ctggagctgggcatcgacatcggcgacgtcgagctggtctgccagatcgcctcgccgcgc
tccatcgcctccttcctgcagcgcgtcgggcgctccgggcacagcgtcggcggcacgccc
aaggggcggttgttcccaacttcaagggatgagctgatcgagtgcgtggcgctgctcgac
agcgtgcggcgcggcgagctggatgcattgtcgattccgcacgcaccgctcgacgtgctg
gcccagcagatagtcgcggaagtggcctgccgcgaatggcgcgaggacgaactcttccag
ctgctgacccgcgcccagccctacgccgatttgtcgcgcgaacgtttcgacgcattgctg
cggatgctggtcgacggctacaccagccgcaacggccagcgcggcgcctacctgcatcgc
gatggcgtgcatgggctgctgcgcggaaggcgtggcgcgcgtctgaccgcggtgacctcc
ggcggcaccattcccgacaccggcgattaccaggtgctgctggagccgcaaggcctgacc
gtcggtacggtgaacgaggacttcgccgtggaaagcctggccggcgatgtcttccagctc
ggcaaccagtcctaccgcatcctgcgcatcgagccgggcaaggtgcgcgtcgaggacgcc
cagggccagccgccgaacatcccgttctggctcggcgaggcgccggggcgcagcgacgag
ctgtcggccagcgtgtcgcgcctgcgcgagcggctggatgggttgctggcggaagcgctg
ggcggcgccgagccgttgcagccggcgatggcctggctggaaaacgagcttgggctgaac
gaagccgccgcgcgccaactggtggaatacctggcccgcgcccgcgccgccctcggcgtg
ctgccgagccagtcggcgctggtgctggaacgtttcttcgacgagtccggcggcatgcag
ctggtgatccattcgccctatggcagccgggtcaaccgcgcgtgggggctggccctgcgc
aagcgcttctgccgcacattcaacttcgagctgcaggcggcggccaccgaggacgcgatc
atcctctcgctatccaccagccacagctttccgttggatgaggtgtggcgctacctgaat
gccaataccgccgagcaggtgctggtccaggcgctgctcgatgcaccgctgttcggcgtg
cgctggcgttggaacgccaccacctcgctggccctgccgcgctaccgcggcgggcgcaag
gtggcgccgcaactgcagcgcatgcgcagcgaggacttgctcgcgtcagttttccccgac
caggtggcgtgcctggagaacatcgtcggcgagcggcagattcccgaccatccgctggtg
gcgcagaccctcgacgattgcctccacgaggcgatggacacggaggcctggctggccctg
ctgcggcgcatggagcacggcgaggtggcgctgtatgcccgcgacctgccggcgccttcg
ccgctggcggcagaagtgctcagtgccagcccctatgccttcctcgacgatgcgccgttg
gaagagcgccgcacccaggcggtgctcagccggcgctggagcgatccagaatcctccgac
gatctcggcgcgctcgatccggaagccataacggcggtgcgtgccgaggcctggccggaa
gcgcgcgaccccgacgagatgcacgaggcgctgagcggcctgggttgcattcgtgccgat
gaggcgtgcgagaaccaaggctgggaactgctgcttgggcgcctggccaagtccggccgg
gcgacgcgcctgcgcagtggcgaggctgatctgtgggtagccgccgaacgcctctgccag
gtgctggctgtctatccacaggcgcggctgacgcccgaactgcaattgccgatggcgctg
caggaaggctggtcagcggaagacgcgttgctcgaactgctgcgtgcgcgattgaccggc
ttcggtccgcgcacgcaacgccagatggtggaagacctcgccttgcctgccgccgatatt
gcctttgccttggcgggactggagcgcgagggctacgtactgcgcggccgcttcagcccg
gatgccggcgaggaggagtggtgcgagcgccacctgctggcgcgcatccaccgctacacg
gtgcgccgcctgcgccgcgagatcgagccggtggagcgggccgacttcatgcgcttcctg
ttcgactggcagcgcgtttcgaagagctcgcaagtgcgcggcgccgaggcgctggccggt
gtgctcagccagctggagggcttccaggccgccgccggagcctgggaaagcgagctgctg
ccggcgcgggtggccgattacgggatcaattggctggacgacctgtgccgcgcgggccgc
ttggtctgggcgcgcctgccgagccgcgccacgctgcgcggtcgcagtggcggcggaccg
ttgcgtagcacgcccatcgtcctgctgccgcgccgcgagctgccgctgtggagcgcgctc
tgcgccgatgcgccggaggcggagctgtcctcgaaggcgcagaaggtgctgcaggcgctg
cagacgcacggtgcgctgttcttcgacgagctttccagcgaggcgcacctgctgcgcagt
gaactggagatggccttgggtgagctggtggcggtcggtcgagtgaatgccgacagcttc
gccggcttgcgcgcattgctgcttcctgctgccaagcgcagccgccaggagcgcagggcg
cgcacgccgctgttcggcatggccgatgccgggcgctgggccttgcttcgaaaaccctcg
gtggagctggctgcaggccagccgcagcgcctggcctccgaagtgctggagcacgtagcg
atgacgctactgcgtcgctacggcgtggtctgttggcgcctgctggcgcgcgaggccgac
tggctgccgccgtggcgcgacctgctgcgcgtctaccatcgcctggaggcgcgcggcgag
attcgcggcgggcgcttcgtcgccgggctgaccggcgagcagttcgccctgccggaagcg
gtcggcctgctgcgcgaagtgcgccggcgcgagaaggatggcgagtacgtggtgctttcg
gcggtcgatccgctgaacctggctggtacgctgttgcccggcagcaaggtgccgacggtg
ctgggtaaccgggtgatctacaaggatggtgtagcgctgggtgcgctcatcgccggcaag
ccggtgctctgggtggagttgccgagagaagaagaggcgcgggtgcgggagctgttgatc
cgccggatttaa

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