Paraburkholderia kirstenboschensis: RW095_16445
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Entry
RW095_16445 CDS
T09457
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RW095_16445 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pkf03021
]
RW095_16445 (rpoD)
Transcription machinery [BR:
pkf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RW095_16445 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
Motif
Other DBs
NCBI-ProteinID:
WOD14936
LinkDB
All DBs
Position
2:1705421..1707832
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AA seq
803 aa
AA seq
DB search
MAKTTGGKNTPGPRSREQTTKVTSARLDSSARKASAVSVTPAAGKKSSTTLAARAEPAGV
VKAVAKAAKTVPPPAAKRPGVRSAREAAVAQDDAAVRETPVSTVQPAVVHQPRVETTAGT
ANSMTKKLNEVPVDDDATQSEETPVAASGKVEKAKARDRRAKEKALLKDAFSSSAPGTVE
ELEERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAP
DAETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGE
IEIAKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDADAEDADGF
SVQEAEAIESEDEEAEEEAEEDEEEDDGTAQATANAAQMEALKRASLEKFALISEWFDKM
RRAFEKEGYKSKSYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHTV
VDKCGMPRAEFIARFPGSETDLEWADKIVSEGHAYSAILTRNIPAIREQQQRLLDLQARV
VLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQIL
QETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAP
ADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSDKLKSFLEGN
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagactacaggcggaaagaacacacccggcccacgctccagggagcagaccaca
aaagtcacttcggccaggttagattcttccgccaggaaagcgtctgccgttagcgttaca
ccggctgccgggaagaagtcttcgaccaccttggccgcgcgagcggagccggcgggggtc
gtaaaggcggtcgcgaaggcggcgaaaactgtaccacctccggccgcgaaacgaccgggt
gtcagaagcgcaagggaagcggctgtcgcgcaggacgatgcggcagtgcgcgagactcca
gtatccacggttcaaccggctgttgtccaccagccgcgagtcgagactacagccggtacg
gcgaactccatgacgaaaaagctgaatgaagtacccgtcgatgacgacgcaacccagagc
gaagaaacccctgtggccgcttccggcaaagtggaaaaggccaaggctcgcgaccgtcgt
gccaaggaaaaggcgctcctgaaagacgcgttctcttcgtcggcgcccggcacggtggag
gaactcgaggagcgccgttccaaattgcgcgcgctcatcaagctcggcaaggagcgcggt
ttcctcacgtacgctgaaatcaacgatcacctgccggacaacttcaccgagaccgaggcg
atcgaaggcatcatcagcacgttcaacgacatgggcgtggctgtgtacgagcaggcgccc
gacgccgaaacgctgctgctgaacgacaacgcgcccgccgcttcgtcagacgacgaagtc
gaggaagaagccgaagttgcgctttccaccgtcgactcggaattcggccgcacgaccgac
ccggtgcgcatgtacatgcgtgaaatgggtacggtcgaactgctcacgcgcgaaggcgaa
attgaaatcgcgaagcggatcgaagacggcctgaagcacatggtgatggccatttccgcg
tgtccgactacgatcgccgacattctggccatggcagagcgcgtcgcgaacgaggaaatc
cgcatcgacgaactggtcgacggcctgatcgacgccgacgctgaagacgcggacggcttc
tccgtgcaggaagcggaagcgatcgaaagcgaggacgaggaagcagaggaagaagccgaa
gaggacgaggaagaagacgacggcaccgcgcaggccacggccaacgcagcgcaaatggaa
gcgctcaagcgtgcgtcgctcgaaaaattcgccctgatcagcgaatggttcgacaagatg
cgtcgcgcgttcgagaaggaaggctacaagtcgaagtcgtacctgaaggcgcaggaaacc
atccagaacgagctgatgacgatccgcttcaccgcccgtactgtcgagcgtttgtgcgac
acgctgcgtgcgcaggtggacgaggtgcgccaggtcgagcgtcagattctgcatacggtg
gtcgacaagtgcggcatgccgcgtgcggaattcatcgcgcgttttccgggtagcgaaacg
gacctcgagtgggctgacaagatcgtcagcgaaggtcatgcgtatagcgcgatcctcacg
cggaatattccggccattcgcgagcagcaacaacgtctgctggatctgcaggcgcgtgtg
gtgctgccgctgaaggacctgaaggaaaccaaccgtcagatggcggccggcgaactgaag
gcgcgccaggcgaagcgcgaaatgaccgaggcgaatctgcgtctcgtgatctcgattgcg
aagaagtacacgaaccgcggtttgcagttcctcgacctgattcaggaaggcaacattggc
ctgatgaaggcggtggacaagttcgaatatcgtcgtggctacaagttttccacgtacgca
acgtggtggatccgtcaggccattacacgttcgatcgcggaccaggcgcgcacgatccgt
attccggttcacatgatcgaaacgatcaacaagatgaaccgcatctcgcgtcagattctg
caggaaaccggcctcgagccggatccggcaacgctggccgagaagatggaaatgccggaa
gacaagatccgcaagatcatgaagatcgcgaaagagccgatctcgatggaaacgccgatc
ggtgacgacgacgattcgcatctgggcgactttatcgaagatacgaacaccgtggcgccg
gcagacgccgcgttgcacgcgagtatgcgcgacgtcgtgaaagacgtgctcgattcgctg
acgccgcgtgaagcgaaggtgctgcgcatgcgtttcggtatcgagatgagcaccgatcac
acgctcgaagaggtcggcaagcagttcgacgtcacgcgtgagcggatccgtcagatcgag
gcaaaggcgctgcgtaagctgcgtcatccgagccgttcggacaagctcaagtcgttcctt
gaggggaactga
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