Paraburkholderia kirstenboschensis: RW095_26985
Help
Entry
RW095_26985 CDS
T09457
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkf
Paraburkholderia kirstenboschensis
Pathway
pkf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RW095_26985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkf03400
]
RW095_26985 (ligD)
Enzymes [BR:
pkf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RW095_26985 (ligD)
DNA repair and recombination proteins [BR:
pkf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RW095_26985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WOD19858
LinkDB
All DBs
Position
1:complement(942047..944005)
Genome browser
AA seq
652 aa
AA seq
DB search
MSRWSSSRASRKHPAKESPADGIPSLIEPQLATLAAHIPADGDWSYEIKFDGYRMLGRIQ
DGQAQLFTRNGHDWTDRMPRLRDALTSLPVDDAWIDAEAVVLNQAGAPDFNALQNAFDRR
STAQIVLFIFDLLWINGTDIREQPLRARRQLLRELMEDVESPLLRYSEDFAEDPASLVSS
ACRMKLEGIIGKRGDAPYRSGRSTDWIKLKCNLRQEFVVGGISRVKGAKSGVRSLLLGVH
EKDGSLRYAGHVGPNFSPRQSAAFMKRIAALTVEQPPFYNPPEAERDRDFHWLKPDVVAE
VSFLEWTPGGEIRHPLFHAIREDKPAGAVTEETVVDAPDEGHFGSTRERPGPRGTVLVGD
IKISNPQRVMDEITGHTKLDLVRYYDAIAEWALPYLHNRPLTLVRAPDTISGELFFQKHA
ERMRIPGVEELPVELHPNHPPLLVANNIDALVGLAQMSVVELHSWNAVAPDLEHPDRVIF
DLDPDPALHWAAMLEAAELVKTVLDELGLRSFAKTSGGKGFHIVVPLTRKQGWDEVKDFS
HAVARHMSRVVPEKFSAVSGPRNRVGKIFIDYLRNSRGASTVAPFSVRARGGMAVSMPIS
WDELKDVRRGDEWTMKKAVARQRSLQADPWEGIWRTRQGITAAMRRAVGMNR
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgatggagttcatcccgggcgagccgtaagcaccccgccaaagaatcccccgcc
gacggcataccgtcgttgatcgagccgcaactcgcgactctcgccgcgcatatcccggcc
gatggcgactggtcgtatgaaatcaagttcgacggctatcgaatgcttgggcgcatccag
gacggccaggctcaattgttcacccgcaacggccacgactggaccgatcgcatgccccgc
ttgcgcgacgcgctcacatcactgcccgtcgacgacgcatggattgatgcagaggccgtc
gtgctcaaccaagcaggcgcacccgatttcaatgccctgcagaatgcgtttgaccggcgc
agcacagcccaaatcgtccttttcatttttgacctgctatggatcaatggcaccgatatt
cgtgagcagccgctccgcgcacgcagacagcttttgcgcgaactgatggaagacgtcgag
agcccactattgcgctactccgaagatttcgccgaggaccctgcctcgctggtctcgtcc
gcatgccgcatgaagctcgagggcatcatcggaaaaagaggcgacgcgccctaccggtct
gggcgctccacggactggatcaagctgaagtgcaacttgcggcaagaattcgtggtcggc
ggcatatcgcgggtcaaaggcgcgaagtccggcgttcgatcgctgctgctgggagtgcac
gaaaaagacgggtcactacggtatgcgggtcacgtcgggccaaacttctcgccgcggcaa
agcgcggcattcatgaaaaggatcgccgcgttgacggtcgagcagcctccgttctacaac
ccgcctgaagcggaacgcgaccgagacttccactggctgaagccggacgtggtggctgag
gtgtcgtttcttgagtggactcccggcggagagataaggcacccgcttttccacgctata
cgggaagacaagccagccggcgcagtgacggaagaaacggtcgtcgacgcgcccgacgag
ggacatttcggatccacgcgcgagcgtcccggcccgcgcggaactgtactcgtgggcgac
atcaagatcagcaatccgcagcgcgtgatggatgagattaccggccataccaagctggat
ctcgtccggtactacgatgcgattgcagagtgggcgctgccttaccttcacaataggccg
ctcactctcgtgcgggcgccggacacaatcagcggcgagctgttcttccagaagcatgcc
gaacgtatgcgcattccgggcgttgaggaattgcccgtcgaactgcaccccaatcaccca
ccactgctggtagcgaacaatatcgatgctctggtagggctcgcgcagatgagcgtcgtc
gagctgcactcatggaacgcagtggctcctgaccttgaacaccccgaccgcgtgatcttc
gaccttgaccccgaccccgctctgcactgggctgccatgctcgaggcggccgaactggtg
aagaccgtgctcgacgagctaggcctgcgatccttcgcgaagacgagcggcggaaaaggc
ttccacatcgtcgttcctctgacgcgcaaacagggctgggatgaggtgaaagacttctca
cacgcggtcgctcgccacatgtcgcgcgtggtgccggaaaagttctctgccgtctcgggg
ccgcgcaaccgcgtgggcaagatcttcatcgattatctacgcaacagccgcggcgcgagt
accgtcgcgcccttttcagtgcgcgcacgcggcggcatggccgtgtcgatgccgatctca
tgggacgagctgaaggacgtccggcgcggtgacgaatggacaatgaagaaggcggtagcc
cggcagcgttcactgcaggcagatccgtgggaaggcatctggcgcacgcgacagggaatt
accgccgcgatgcgccgtgccgttggtatgaaccgttag
DBGET
integrated database retrieval system
