Pseudomonas koreensis: AYO71_18905
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Entry
AYO71_18905 CDS
T04647
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pkr
Pseudomonas koreensis
Pathway
pkr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pkr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AYO71_18905 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pkr03400
]
AYO71_18905 (ligD)
Enzymes [BR:
pkr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AYO71_18905 (ligD)
DNA repair and recombination proteins [BR:
pkr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AYO71_18905 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Menin
Motif
Other DBs
NCBI-ProteinID:
AMT89502
LinkDB
All DBs
Position
complement(4256639..4259272)
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AA seq
877 aa
AA seq
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MNRNLDDYNRMRDFSATSEPAAIKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKPAAAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKTEKTEKTEKTKTAEKQPAKKTAASKKAETAPSQAGLAGGKVRITHPDRVIDAV
SGTTKMQLAQYYASVAEHILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITALDK
DVTGQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVE
ATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRI
SAVSGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNI
YNVHERLTEVGDEPWAEMKKTRQTITAEMRKRVGMKK
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcaatcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctggaactcgacggcgccctg
aagagttgggcggtgccgaaggggccgtcgctggacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggtgccggtgatgtgatcgtctgggatcgcggtgtgtggattccgctggaagatccg
cacaaggcctatgccaagggccggctcaagtttgagttgcaaggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaggaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgacgtgctggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggtaaaccggcggctgccgccgataaggccaaa
ccggtaaagaaggccccggccaaaccgcgcaagcaggcgtccgggcagcttaccggcgca
cgcaaggccaagctcccagcgctgatcaagccggaactggcgacgctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaagtttgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctgttcacccgcaacggccatgactggacgcacaaactgccg
cagcaggccaaagcgctggcggcgctgggtctggaatcggcctggctcgatggcgaaatg
gtcgtggccaacgagcaaggcgtgccggattttcaggcgctgcagaatgccttcgatgcc
gggcgcagcggcaatattgtttattacctgttcgacgtgccgtatctcaatggcgtcgac
ctgcgcgacgtgccggtcgaagaacgccgcgccgcgctgagcaccatcctcggcgcgcag
aaagaatcgtcaacgctgcgcttctccgaagccttcgaagaaacccccgatgcgctgctc
aacagcgcctgccaaatgcagatggagggcctgatcggcaagcggctcggctcgccttat
gtgtcgcggcgcagcggcgactggatcaagctcaagtgcaaacatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggcgcgcgcagtgccttcggtgccttgctgctcggc
ctgcacgacgctgacagtggcgagttgcgctacgccggcaaggtcggcaccgggttcaac
gaaaccacgttgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgcggca
gtggtcaatccgcccagcggttttgaggccaaaggcgtgcactggctcaaacccaaactg
ctggccgaagtggcgttcgccgagatgaccaaggacggctcggtgcggcatgccgtgttc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaaaaccgaaaaaaccgaaaaaaccgaaaagaccaaaaccgcc
gaaaagcagccggcaaagaaaaccgccgccagcaaaaaagccgaaaccgcgccttcgcaa
gcaggtctggccggcggcaaggtacgcatcactcaccccgatcgagtgatcgatgcggtc
agcggcacaaccaagatgcaactggcgcagtattacgccagcgttgccgaacacatcctg
ccgcaactcaaggatcgtcccgtggccttagtgcgtgcaccggacggcatcgccggcgaa
ctgtttttccagaagaacgccgaacgcctggccattcccggtatcactgctctggacaag
gacgtcaccggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtg
cagatgagcaccgtcgaactgcacacttggaacgcgacgaaggtggatctggacaagccc
gatcgcttcgtcctcgacctcgacccggatcctgcgctgccatggaaaagcatggttgaa
gccaccgcgctgaccctgactgtgctcgatgagctgggcctcaaagccttcctgaaaacc
agcggcggcaaaggcattcacctggtggtgccattgacgcgcaagcacggctgggacgaa
gtgaaagacttcagccacgccatcgtcagccacatggccaagttgctgccggaccggatt
tcagcggtgtccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaac
ggcctcggtgccaccaccatttgcgcctacgccgcacgcgcgcgggaaggcatgccggtg
tctgtgccgctgtatcgagaggaagttgctgaaatcaagggcggtaatcactggaacatc
tacaacgttcacgagcgtctgaccgaagtcggcgatgagccttgggcggaaatgaagaaa
acccgtcagaccataaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga
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