KEGG   Pseudomonas koreensis: AYO71_18905Help
Entry
AYO71_18905       CDS       T04647                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pkr  Pseudomonas koreensis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pkr00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    AYO71_18905 (ligD)
Enzymes [BR:pkr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AYO71_18905 (ligD)
DNA repair and recombination proteins [BR:pkr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AYO71_18905 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(4256639..4259272)
Genome map
AA seq 877 aa AA seqDB search
MNRNLDDYNRMRDFSATSEPAAIKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKPAAAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSILAQLKPLQTKSAA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKSEKTEKTEKTEKTKTAEKQPAKKTAASKKAETAPSQAGLAGGKVRITHPDRVIDAV
SGTTKMQLAQYYASVAEHILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITALDK
DVTGQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVE
ATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRI
SAVSGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNI
YNVHERLTEVGDEPWAEMKKTRQTITAEMRKRVGMKK
NT seq 2634 nt NT seq  +upstreamnt  +downstreamnt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcaatcaagcgctcgggccgtaagtcggccaaggatcatgcgttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctggaactcgacggcgccctg
aagagttgggcggtgccgaaggggccgtcgctggacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggtgccggtgatgtgatcgtctgggatcgcggtgtgtggattccgctggaagatccg
cacaaggcctatgccaagggccggctcaagtttgagttgcaaggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaggaacaatggttcctgatcaag
catcaggacaacgccgcgcgaccgcaggatgatttcgacgtgctggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggtaaaccggcggctgccgccgataaggccaaa
ccggtaaagaaggccccggccaaaccgcgcaagcaggcgtccgggcagcttaccggcgca
cgcaaggccaagctcccagcgctgatcaagccggaactggcgacgctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaagtttgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctgttcacccgcaacggccatgactggacgcacaaactgccg
cagcaggccaaagcgctggcggcgctgggtctggaatcggcctggctcgatggcgaaatg
gtcgtggccaacgagcaaggcgtgccggattttcaggcgctgcagaatgccttcgatgcc
gggcgcagcggcaatattgtttattacctgttcgacgtgccgtatctcaatggcgtcgac
ctgcgcgacgtgccggtcgaagaacgccgcgccgcgctgagcaccatcctcggcgcgcag
aaagaatcgtcaacgctgcgcttctccgaagccttcgaagaaacccccgatgcgctgctc
aacagcgcctgccaaatgcagatggagggcctgatcggcaagcggctcggctcgccttat
gtgtcgcggcgcagcggcgactggatcaagctcaagtgcaaacatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggcgcgcgcagtgccttcggtgccttgctgctcggc
ctgcacgacgctgacagtggcgagttgcgctacgccggcaaggtcggcaccgggttcaac
gaaaccacgttgaaaagcatcctcgcccaactcaagccgttgcagaccaaaagcgcggca
gtggtcaatccgcccagcggttttgaggccaaaggcgtgcactggctcaaacccaaactg
ctggccgaagtggcgttcgccgagatgaccaaggacggctcggtgcggcatgccgtgttc
catggtttgcgcgatgacaaaccggccaaggacattaccgaggagcgagcgaagcctgtg
aaagctgccaagtccgaaaaaaccgaaaaaaccgaaaaaaccgaaaagaccaaaaccgcc
gaaaagcagccggcaaagaaaaccgccgccagcaaaaaagccgaaaccgcgccttcgcaa
gcaggtctggccggcggcaaggtacgcatcactcaccccgatcgagtgatcgatgcggtc
agcggcacaaccaagatgcaactggcgcagtattacgccagcgttgccgaacacatcctg
ccgcaactcaaggatcgtcccgtggccttagtgcgtgcaccggacggcatcgccggcgaa
ctgtttttccagaagaacgccgaacgcctggccattcccggtatcactgctctggacaag
gacgtcaccggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtg
cagatgagcaccgtcgaactgcacacttggaacgcgacgaaggtggatctggacaagccc
gatcgcttcgtcctcgacctcgacccggatcctgcgctgccatggaaaagcatggttgaa
gccaccgcgctgaccctgactgtgctcgatgagctgggcctcaaagccttcctgaaaacc
agcggcggcaaaggcattcacctggtggtgccattgacgcgcaagcacggctgggacgaa
gtgaaagacttcagccacgccatcgtcagccacatggccaagttgctgccggaccggatt
tcagcggtgtccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaac
ggcctcggtgccaccaccatttgcgcctacgccgcacgcgcgcgggaaggcatgccggtg
tctgtgccgctgtatcgagaggaagttgctgaaatcaagggcggtaatcactggaacatc
tacaacgttcacgagcgtctgaccgaagtcggcgatgagccttgggcggaaatgaagaaa
acccgtcagaccataaccgccgagatgcgcaaacgcgtcggcatgaaaaagtga

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