Parvibaculum lavamentivorans: Plav_3659
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Entry
Plav_3659 CDS
T00580
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pla
Parvibaculum lavamentivorans
Pathway
pla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Plav_3659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pla03400
]
Plav_3659
Enzymes [BR:
pla01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Plav_3659
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Plav_3659
DNA repair and recombination proteins [BR:
pla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Plav_3659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ABS65257
UniProt:
A7HZC4
LinkDB
All DBs
Position
3912563..3913444
Genome browser
AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLAPALEGRRIVHVTQRRPDLRFPLPELFAKRLTGRRVIRLERRAKYI
LVYMEPAKSGGAEDVLIMHLGMSGRFTVHGPSGSSAPGLFHLGMPGGETHDHIVFDMEDG
TRVVYADHRRFGFMDLVAEPELASSRHLAALGPEPLGNEFSALVLAERLKGRRAPIKSAL
LDQRTVAGLGNIYVCEALYRAGISPLRTAASIGPARVERLTAAIRAVLQDAIAAGGSTLR
DYAATDGELGYFQHAFAVYGREGEACSKPGCGGTVRRIVQSARSTFYCPACQR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttccagaagtcgagactgtgcgccgcggcctcgcccccgcgcttgaaggc
cgccgcatcgtccatgtgacgcagcgccgccccgatctgcggttcccactgccggaactt
ttcgcgaagcggctgacaggacgccgcgtgatccgcctggagcgccgcgcgaaatacatt
ctcgtctatatggaacctgcaaaatccggcggcgcggaagacgtgctcatcatgcatctc
ggcatgtccggccgcttcactgtgcatgggccaagcggcagctccgcccccggcctcttc
cacctcggcatgccgggcggcgaaacccatgaccacatcgttttcgacatggaggacggc
acgcgcgtcgtctatgcggatcatcgccgcttcggcttcatggatctggtcgccgagccg
gaactcgcctcgagccgccacctcgccgccctcggtcccgaacccctcggcaatgaattc
tcagccctcgtcctcgccgaaaggctgaagggccgccgcgcacccatcaaatcggcactg
ctcgatcagcggaccgtcgcaggcctcggcaatatctacgtctgcgaggccctctaccgc
gccggcatctcgcccctccgcaccgccgcctccataggccccgcccgcgtcgagcgcctc
accgccgccattcgcgccgtcttgcaggacgcgattgcggccggtggctccaccttgcgc
gactatgcggcgaccgatggcgaactcggctatttccagcacgccttcgccgtttatggc
cgtgaaggcgaagcctgttcaaagccgggctgtggcggtaccgtgaggcgcatcgtgcaa
tcggcgcgatcgacattctattgccccgcctgccagcgatag
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