Palleronia sp. LCG004: RVY76_06200
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Entry
RVY76_06200 CDS
T09465
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
plcg
Palleronia sp. LCG004
Pathway
plcg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RVY76_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plcg03400
]
RVY76_06200
Enzymes [BR:
plcg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RVY76_06200
DNA repair and recombination proteins [BR:
plcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RVY76_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WOI57373
LinkDB
All DBs
Position
complement(1287543..1288970)
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AA seq
475 aa
AA seq
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METIRLPELGTASAWRAAARGLLGQEVPPDGVIWLYGDGPGDLFGDAPSPIATGQGPNVP
KSFVQLAESVCWHSDCERFARLYAFLWRLRAQPGLMQDRGDEALARLRILEKAVHRDKHK
MKAFVRFREIDAEGPRRRFAAWFEPAHHIVEPMAGFFARRFGDMDWMIATPGRTLIFTGG
EVSLAPGQPKPDFPEDATEGLWTTYFRNIFNPARLKIQAMQSEMPRKYWKNLPEAAAIPE
MIAGAEARAREMQLATPSLAPMRAERISERLRMTEETPAATDLEALRREAEGCTRCPLYR
DATQVVMGEGPTDAPLMIVGEQPGDHEDLAGRPFVGPAGQLFDEIAGEVGLDRSQAFVTN
AVKHFKFAPRGKRRIHQRPDTGEVQACKWWLDAERTLVRPKLILAMGATAVASLTGSGQG
ILKRRGHFERTEDGMEVLVTLHPSYLLRVPNAEAKAAATRDFRADLALAVERLST
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggagacgattcgcctgcctgaactcggcaccgcatctgcctggcgagccgcggcccgg
ggattgctggggcaggaggtgcctccggacggggtgatctggctttacggcgatgggccg
ggggatctgttcggcgatgcgccatccccgattgcaacaggacaggggccgaatgtcccg
aaaagctttgtccaacttgccgaaagcgtctgctggcatagtgattgcgagagatttgcc
agactctatgcttttctctggcggttgcgtgcgcaaccggggctgatgcaggatcgcgga
gatgaagcgcttgcccggctgcgtattttggaaaaggcggtgcaccgcgacaagcacaag
atgaaggctttcgtccgctttcgcgagatcgatgccgagggtcctcgccgtcgcttcgcc
gcctggttcgagcctgcgcaccatatcgtcgagccgatggcggggttcttcgcgcggcgc
ttcggcgacatggactggatgatcgcgacgcccggccggacactgatcttcacgggcggg
gaggtttcgctcgcgcccggtcagccaaagccggattttcccgaagatgcgaccgaaggt
ctctggaccacgtatttccggaacatcttcaatcccgcgcgcctcaagatccaggcgatg
caatcggaaatgccaaggaaatactggaagaaccttcccgaagccgcggcaattcccgag
atgatcgcgggagccgaggcgcgggcacgtgaaatgcagcttgccacaccttcccttgcg
cccatgcgggcggagcggatcagcgaaaggctcaggatgaccgaggaaacacccgccgcc
acagatctcgaagctctgcgtcgtgaggccgagggatgcacacgctgcccactctatcgc
gacgctacacaggtcgtgatgggcgaggggccgaccgatgcgccgctgatgatcgtgggc
gaacagcccggcgatcacgaggatctcgccggtcgtcccttcgtcgggcctgcagggcag
ctcttcgacgagatcgcgggcgaggtggggctggatcgcagtcaagccttcgtcacgaac
gcggtcaagcatttcaagttcgccccacggggcaagcgccgcatccaccagcgccccgac
acgggcgaggtgcaggcctgcaaatggtggctcgatgccgaacggacgcttgtgcgcccg
aagctcatcctggccatgggcgcgaccgcggtcgcgagcctgacgggaagcgggcagggt
attctcaagcggcgcggccatttcgaaaggaccgaagacgggatggaggtgctagtaacg
ctgcacccgtcatatctgcttcgcgttccgaacgctgaggccaaggcggcggcgacccgc
gatttccgcgccgatcttgccctcgcggttgaacgcctttccacctga
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