Plectropomus leopardus (leopard coralgrouper): 121944219
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Entry
121944219 CDS
T07454
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
plep
Plectropomus leopardus (leopard coralgrouper)
Pathway
plep04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
plep00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121944219 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plep00536
]
121944219 (col27a1b)
Glycosaminoglycan binding proteins [BR:
plep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121944219 (col27a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
121944219
NCBI-ProteinID:
XP_042343875
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All DBs
Position
6:29988323..30098206
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AA seq
1702 aa
AA seq
DB search
MEPDNAPYSKLKSTGVGGRVLILWTILCCTCSLRLAQAQDVDVLQQLGLSGRRSGGLSSP
GARSVPNGIIPFKSGVILTPRARIQAPLRTVIPASYSSTNLSLILSLSVHRINNAFLFSV
LSKKKKLQLGVQFEPGKVLVHVGQRSSVSFHYNVHDGQWHNLALDIQGQQVFLHTSCGKT
SVHADLRSKKEEVLDAEGSFLLGKMNHNSVPFEGAICQFDIYPSAKAAHNYCDYIKKHCR
EADTYRPVFPALLPLFSTDPNITVTPITPLLLTEISKKAYRSTLALTEERTTILVPTNSS
LMLNKTSVYQTASSPKPGAVSVSPPVHPGLESPFNFPTQTATTSLRISMTPPNPKPTSHG
SAGKDTKQGDTYSQKPPGERMDLPASTRPPEAKPNLQTTAAYAPGSPSNTYRPQKKQMTT
VAPKKPEPKMTSVQDVEPTSLIPVTPAATDGFQTFDLEPTQFSLLAGPPGLKGEPGPPGL
EGLPGLPGKPGKRGPRGPPGPHGNPGRPGPPGVKGQKGDYGLSPGQAPKGPKGEPGVMGP
PGLHGQHGRKGQKGHPGPCGLPGEPGERGDDGSPGAKGYPGRQGLPGPVGKMGPKGVRGH
IGIPGLFGFPGPDGERGIPGIHGKKGKMGRPGFPGDFGERGPPGPDGNPGELGSPGPCGV
PGLIGDMGPVGIMGLPGPPGLKGVPGNPGEPGLKGDKGDVGLPGEPGECGFKGDKGMQGS
PGFPGPCGNPGPQGKPGERGPDGLPGPPGPEGFPGDIGPPGQNGPEGPKGKQGTRGLPGP
RGTLGLQGDEGPIGPTGPAGLEGRPGRQGFPGLTGPEGLKGETGITGEVGKLGERGLPGF
IGPAGETGIAGEKGDRGKTGAPGPQGETGPMGHTGIPGEMGSPGPQGIPGPPGSRGAIGI
RGPKGRRGLSGPDGLVGEKGSTGVTGPDGPPGKLGLPGETGKLGEPGEAGPKGFPGVQGP
SGPPGAKGIEGEPGPAGPTGTIGPLGEMGPRGPPGKAGERGLPGEPGEKGDIGLSGNIGE
QGLIGQRGEPGIDGEAGLSGPDGAKGDKGDAGQEGAKGDRGEIGLKGKEGPPGLPGLPGV
RGQEGKPGKIGERGKPGEKGSKGHQGHLGETGTVGERGDEGFVGQKGTRGTIGPVGAPGR
MGQQGDPGISGYEGHMGPQGPLGPPGPKGEKGEQGDDSKAEGPPGPQGDRGPPGNRGERG
EPGDPGHIGQIGIDGKRGEAGAPGLPGHPGPKGQQGLKGSKGDQGQKGKTGARGASGTKG
PPGPEGPLGIRGVVGREGLEGPPGIDGLPGKDGTKGVKGEQGEDGEVGLPGKSGPQGTSG
VTGLPGSQGSFGPKGERGLPGQTGPSGKKGAVGGMGLPGKQGEQGPKGQPGDTGEQGFPG
VFGLFGPKGPQGDIGPPGIQGPKGPRGLLGMEGALGPVGIIGPSGHPGPQGDKGSRGETG
LQGPRGFPGPRGPPGPPGPSSSALSLRNEALGAAFQVIIDSHASLRPETYQSMDLPMLDQ
STEILQTLQHLSNLIQKLKNPLGNHDNPARICRDLYNCEHRMHDGTYWIDPNLGCAADTI
EVTCNFTGGGQTCLKPITVSKLEVGVGRIQMNFIHLLSTEAMQHITIHCLNTPVWAAGPS
LQPSSRAVSFKAWSGEKIRAGDLLEPLIPRDDCWIKDGRWHQTHFIFQTQDPNLLPILDV
YNLPTTEPGARYHLEVGPVCFL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaaagcactggagtcggggggagagtt
ctgattctttggactatactctgttgcacctgctctctgaggctagcacaagcacaagat
gttgatgttctgcagcagcttgggctttctgggcgaagatcaggcgggttatcatctcca
ggcgctcgatcagtccccaatggcatcatccccttcaagtctggagtcatcctcaccccg
agggcacgtatccaggcgcctctgcgcactgttatccccgcctcctacagctccaccaat
ctctccctgatactcagcctgtctgttcaccgcatcaacaacgcttttcttttctcagtt
ctgtcgaagaaaaagaaactgcagctcggagtgcagttcgaaccggggaaggtcctggta
cacgtggggcagaggagctctgtgagtttccattacaatgtccatgatggccagtggcac
aatctggcgttggatatccaaggccagcaggtgtttttacacacttcttgtggaaaaaca
agtgtacatgcagacttgcgttcaaagaaagaggaggttctggacgcagagggctctttc
ctgctgggcaaaatgaaccataactcggtgccgtttgaaggcgccatctgtcagtttgac
atttatccctctgccaaggcagctcataactattgtgattacattaagaaacattgcaga
gaagccgacacgtatcggcccgtgtttccagccctgctacctctgttttccacagatcca
aacatcactgtcactcctataactccactgttgttgacggagatatccaaaaaagcttac
agatctactttggccttgactgaggaaaggactaccattcttgttccaactaacagctcg
ctgatgctgaacaaaacatctgtgtatcagactgcgagctctccaaaaccaggtgctgtg
tctgtttctccaccggttcatccagggttggaaagtccgtttaattttccgactcaaact
gctactacatcccttaggatcagcatgacgccaccaaaccctaaaccaacttcacatggc
agtgctgggaaggacacaaagcaaggagatacttattctcagaaacctcctggcgaaaga
atggatttacctgcttcgacccggccgcctgaggcgaagccaaacctccagaccacagct
gcttatgcgccggggtctccttcaaacacctaccgtccccagaaaaagcagatgaccaca
gtagctccaaagaagcctgagccaaaaatgaccagtgtgcaggatgtcgaacccacctcg
cttattccagtcactccagctgcaacagatggcttccaaacatttgacctggaaccgacc
cagttctcactgctggctggaccacctggactaaagggagaaccaggaccgccgggcctt
gaaggacttccaggtttgccaggaaagccaggaaagagaggtccaaggggtcctcctggc
ccacatggaaaccctggtcgtcctggacctcccggagtgaagggacaaaaaggagattat
ggactgtcacctggtcaagccccgaaaggacctaaaggcgagcctggcgtcatgggcccc
cctggactgcatggacaacatggacgaaagggacaaaaaggtcatcccggtccatgtggt
ctccccggtgaacctggtgaacggggagatgatggaagccctggggccaaaggctatcct
ggcaggcagggtttacctgggcctgtagggaaaatggggccaaaaggagtcaggggtcac
attggcatccctgggctttttggctttcctggtcctgatggcgagagaggaattcctggc
attcatgggaagaagggcaagatgggtaggccggggtttcctggtgattttggagagagg
ggacctcctggcccagatgggaacccaggtgaactgggatctcctggcccttgtggagtc
cctggtcttattggagacatgggccctgttggcattatgggcttaccaggaccgccagga
ctcaagggagtacctggaaacccgggggaaccaggactgaaaggtgataagggggatgtt
ggcttaccaggagagccaggggagtgtggattcaaaggggacaagggtatgcaaggctca
cctggttttccaggtccttgtggaaaccctggaccacagggcaaacctggtgaaaggggt
cctgatggtttacctggcccacctggcccagagggttttccaggcgacattggcccacca
ggacaaaatggccctgaaggacccaagggaaagcaagggacaagaggtttgccaggtcca
agagggacacttggacttcagggtgatgagggacccattgggcccactggaccagctgga
ctcgagggcaggcctgggaggcagggattccctggactgacaggcccagaaggactcaag
ggcgagaccgggataactggcgaggtcggaaagcttggcgagaggggactgcctggtttt
atcggtcctgctggggaaactggcatcgcaggagaaaagggggatcgaggcaaaacgggc
gcccccggaccgcagggtgaaacggggccgatgggtcacactggaatacctggagaaatg
gggtcacctggaccgcaagggattccagggcctcctggttctcggggagccatcggcatt
agaggaccaaaaggcaggaggggtctgagcggtcctgatggcctagtgggggagaaaggc
tccactggagtaacgggccctgatggtccaccaggaaaattaggcctccccggggagacg
ggaaagcttggcgagccaggtgaagctgggcctaagggatttccaggtgttcaaggaccc
tcgggacctccaggggccaaaggaattgaaggagagccaggaccagcagggccaacagga
acgattgggccactgggggagatggggccgaggggtccgccggggaaggctggagagaga
ggactgcctggtgagcccggagagaagggtgacatcggtctgtctggtaacatcggggag
cagggtttgatcggccagaggggtgagccaggcattgatggcgaggctggactgagtgga
cctgatggagccaagggcgacaaaggggatgctggtcaagaaggagcaaaaggagacagg
ggtgaaatcggtttgaaaggaaaggaaggaccccctggacttcctggactgccgggagta
agaggtcaggagggtaaacctggcaaaattggtgaaagaggaaaaccaggagaaaagggg
agcaagggtcaccaaggtcatctgggtgagactgggacagtcggcgagcggggagacgag
gggtttgttggacagaaaggcacgagaggaaccatcgggccagtgggcgctccggggaga
atgggccaacaaggagacccgggcatatcgggttacgagggtcacatgggaccacaggga
cccctgggacctcctgggccaaaaggtgaaaagggtgaacagggcgacgacagcaaggca
gaaggtcctccaggtccccaaggtgacagaggtccccccggaaacagaggagagagagga
gagccaggtgaccccggacacattggtcaaataggtattgatggaaagagaggtgaagct
ggtgccccggggcttcctggacatcctggaccaaagggacaacaagggctgaaaggatcc
aaaggtgaccaaggtcagaaaggaaaaactggggcacgaggtgcatctgggaccaaagga
ccaccaggtccagagggtccccttggcatacgtggagttgttggcagggaaggacttgag
ggcccacctggcattgatggactacctggtaaagatggaactaagggagtcaagggggag
caaggagaagacggagaagtgggcttgcctggcaaatctgggccacagggcacaagtggt
gtgacaggtcttcccggaagtcaaggctcctttggaccaaagggggagaggggtcttcca
ggccaaactggtccatcaggaaaaaaaggtgctgttggcgggatgggattgccaggaaaa
caaggagagcagggacctaaagggcaaccaggggatactggtgaacaagggtttccaggg
gtgttcggtctatttggaccaaagggacctcagggggacattgggccaccagggatccag
ggaccaaaaggaccacgtggtttgttgggtatggaaggagctttgggccccgttggcatc
attggccccagcggtcatcctggaccccagggtgacaaaggaagtcggggggagacgggg
ttgcaaggaccaaggggatttcctggccctcgtggaccacctggaccaccgggtccttcc
agttctgccctctcacttagaaatgaggctcttggtgctgcttttcaagtcatcattgat
tcccacgcttcattgaggccagagacctatcaaagcatggacctgcccatgttggaccag
agcacagagatcttacagaccttgcagcatctcagcaatctgatccagaaacttaagaac
ccgctgggaaaccatgacaaccctgcacgaatctgccgagacctttacaactgtgaacac
aggatgcacgatggcacttactggatcgacccaaacctcggctgcgctgccgacactatt
gaggtgacgtgtaacttcactggtggaggacagacatgcctgaaacctatcacagtatcg
aagttggaggtaggagtgggtcgtatccagatgaacttcattcaccttttaagcaccgag
gccatgcagcacatcaccattcactgcctcaacacacctgtgtgggcagcaggaccctcc
ctgcagccttcatccagagctgtgagctttaaggcctggtcaggggagaagattcgggca
ggcgacctcctggagccgctcatacccagggatgactgctggatcaaagatggccgctgg
catcagacccacttcatcttccagacccaggaccctaacttactccccatcctggatgta
tacaacctcccgaccacagaacctggcgcacgctatcacctcgaggttggacccgtgtgc
ttcctatag
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