Peromyscus leucopus (white-footed mouse): 114681729
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Entry
114681729 CDS
T07241
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03082
ATP-dependent chromatin remodeling
pleu04714
Thermogenesis
pleu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114681729 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
114681729 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
114681729 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pleu03021
]
114681729 (Smarcc2)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114681729 (Smarcc2)
Transcription machinery [BR:
pleu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
114681729 (Smarcc2)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
114681729 (Smarcc2)
PBAF complex
114681729 (Smarcc2)
GBAF(ncBAF) complex
114681729 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
114681729
NCBI-ProteinID:
XP_028711236
LinkDB
All DBs
Position
18:complement(1912631..1941544)
Genome browser
AA seq
1252 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTVTEDKSNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKSPASRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDENMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGADEARTEGQAADEKKEPKEPREGAGAAEEEAKEEASEAPKKDEEKGKEGDSEKE
SEKSDGDPIGDPEKEKEPKEGQEEVLKEVGESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQQQQQPPPPPTLPPGSQPIPPAGAAGPPP
AHGLAVASAAVAPAPAGGGAPPGSLGPSEQIGQAGSTAGPQQPQAAGAPQPGAVPPGVPP
PGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAAPSIIPFGSL
ADSISINLPPPPNLHGHHHHLPFGPGTTPPPNLPVSMANPLHPNLPATTTMPSSLPLGPG
LGSAAAQSPAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacaa
gcagagccaccgaccaacaagtccctgtctagcctggttgtacagctgctccagttccag
gaagaggtttttggaaaacatgtcagcaacgcaccgcttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggatccctgtgccacattcttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccagaatccgtcacgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtgcagaataattgcctgtctcgacct
aacattttcctgtgcccagagattgagcccaaactgctagggaagttaaaggacattgtt
aagagacatcagggaaccgtcaccgaggataagagcaacgcctcccatgttgtgtaccct
gtcccagggaacctggaagaagaggaatgggtgcggccagtcatgaagagggacaaacaa
gttcttctgcactggggctactaccccgacagttatgacacgtggattccagctagcgag
attgaagcgtctgtggaagatgctccaactcctgagaaacctaggaaggttcatgccaag
tggatccttgacaccgacacattcaatgagtggatgaatgaggaagactacgaagtcaac
gacgacaaaagccctgcttcccggcggaagaagatttcagctaagaccttgacagatgag
gtaaacagcccggattcagacagacgggacaagaaggggggaaactataagaagaggaag
cgatctccctctccgtcgccaaccccagaagctaagaagaagaatgctaagaaaggacca
tcaacaccttacaccaagtcaaagcgaggccacagagaagaggaacaagaagacctgacg
aaagacatggatgagccctccccagtcccgaacgtagaagaggtgacgctccccaaaaca
gtcaacactaagaaggactcggagtcggccccagtcaaaggaggcaccatgactgacctg
gatgaacaggaggacgagaacatggagaccacgggcaaggatgaggatgagagcagcacc
ggcaacaaaggggagcagaccaagaacccagacctgcacgaggacaacgtgaccgagcag
acccaccacatcatcatccccagctacgccgcctggtttgactacaacagtgtccacgcc
atcgaacggagggctctccctgagttcttcaacggcaagaacaagtccaagactccagag
atctacctggcatatcgaaacttcatgattgacacgtaccgactgaacccccaggagtat
ctgacatccactgcctgtcggcggaacttggcgggtgatgtctgcgctatcatgagggtc
catgccttcctggagcagtggggtcttattaactaccaggtagatgctgagagccgacca
accccaatggggcctccacccacttcccacttccacgtcttggcggacacaccgtcgggg
ctggttcctcttcagcccaagaccccacagggccgccaggttgatgctgataccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagagctctgcttcccagcaaatgctcaactttcccgacaaaggcaaagagaaacca
accgacatgcagaacttcggactgcgcacagacatgtacacaaagaagaacgttccctcc
aagagcaaagccgcggccagcgccacccgggagtggacggagcaggagacgctgctgctc
ctggaggctctggaaatgtacaaggatgactggaacaaagtgtctgaacatgtggggagc
cgcacacaggatgagtgcatcttgcattttcttcgccttcccattgaagacccgtacctg
gaggactcggaggcctccctaggccctctggcctaccagcccatccccttcagtcagtca
ggcaaccctgtcatgagcactgttgccttcctggcctctgtcgtcgatccccgagttgcc
tctgctgcggcgaagtcagctctagaagagttttccaaaatgaaggaagaggtgcccaca
gccttggtggaagcccacgtgcggaaagtggaagaagccgccaaggtcacaggcaaggca
gaccccgcctttggtctcgaaagcagcggcattgcagggaccacctctgacgagcccgag
cgtatcgaggaaagcggggctgacgaggcgcggacagagggccaggcagcagatgagaag
aaggagcctaaggaaccacgggaaggagcaggagctgccgaggaggaagcgaaggaggaa
gccagtgaggctcccaagaaggatgaagagaaagggaaggaaggggacagcgagaaggag
tcggagaagagcgatggggacccgataggtgatcctgagaaagagaaggagccgaaagaa
gggcaggaggaagtgctgaaggaagtgggcgagtccgagggggagaggaagacgaaggtg
gagcgagacatcggtgagggcaacctctccaccgccgctgccgctgccctggccgctgcc
gcagtcaaggccaagcatttggctgctgttgaggagaggaagatcaagtctttggtggcc
ctgttggtggagacccagatgaagaaactagagatcaaactccgccactttgaggagctg
gaaacgataatggaccgggagcgagaagcactggagtatcagaggcagcagctcctggcc
gaccggcaggccttccacatggagcagctgaagtacgcggagatgcgggccaggcagcag
cacttccagcagatgcaccagcagcagcaacagcagcagcagcagcagccgccgccaccg
cccaccctgcccccaggctcccagcccatacccccagccggggccgctgggcccccccca
gcccatggtctagctgtggcttcagcagcggtggcccctgctcctgctggcggaggggcc
cctccgggaagcttgggcccttctgaacagatcgggcaagcagggtcgacggcagggcca
cagcagccacaagcagctggagccccccagcctggggcagtccccccaggggtacccccc
cctggaccccatggcccctcgccgttccccaaccaacaaactcctccctcaatgatgcca
ggggcagtgccaggcagcgggcacccaggcgtggcgggtaatgctcctttgggtttgcct
tttggcatgccgcctcctcctcctcctgctgctccatccatcatcccatttggtagtcta
gctgactccattagtattaacctcccccctcctcctaacctgcatgggcatcaccaccac
ctcccgtttggcccgggcactacccccccacctaacctgcctgtgtccatggcgaaccct
ctacatcctaacctgccggcgaccaccaccatgccatcttccttgcctctcgggccgggg
ctcggatccgccgcagcccagagccctgccattgtggcggctgttcagggcaacctcctg
cccagtgccagcccactgccagacccaggcacccccctgcctccagaccccacagctccg
agcccaggcacagtcacccctgtgccacctccacagtga
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