Paucimonas lemoignei: NCTC10937_02207
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Entry
NCTC10937_02207 CDS
T05492
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
plg
Paucimonas lemoignei
Pathway
plg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC10937_02207 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plg03400
]
NCTC10937_02207 (ligD)
Enzymes [BR:
plg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC10937_02207 (ligD)
DNA repair and recombination proteins [BR:
plg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC10937_02207 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
SQF98084
LinkDB
All DBs
Position
1:complement(2463567..2466320)
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AA seq
917 aa
AA seq
DB search
MSAALDEYNRKRDFDATSEPSGNEAKGRRGASKTKTSTKAAHALQFCIQKHDASRLHYDF
RLELDGTLKSWAVPKGPSLDPKAKRLAVHVEDHPISYATFEGSIPEGHYGAGDVIVWDRG
VWKPLSDPAEAYTKGRLKFELQGEKLAGVWNLVRTHMPGKQEQWFLIKHQDEFARPESDY
DVVKAEPHSVLSERTIVEKQAAKKSPKKSSAKTAEPKPASPKPVEKVGKAAAAESATASK
KSSGKTLLANAEPAAIPDSIKPELATLVDSAPEGDWRYEIKFDGYRVMARINDGKVQLFT
RNGHDWTHKLPRQAEALASLDLESAWLDGEMVVANEQGVPDFQSLQNAFEAGSSDAISYY
LFDMPYLNGMDLRQVPVEQRRAALAKVLERSEDPVLRFSEDFAETPDALLNTACQMKMEG
LIGKRTGSAYVSRRSGDWIKLKCKRRQEFVVVGFTEPKGARSKFGALLLGLHDADSGELR
YAGKVGTGFNEATLSSIHQQLTPLEVKKPAVINPPTGFEAKGVHWLKPQLLAEVAFAEIT
QDGSVRHAVFHGLRTDKPARSITEERPATPARQKKTASKTAAHSAKAKTTAAEAEAQPKP
EPKPKPKSNAKPKAEETKTTEPALTGKVRLTHPERIIDPVSGATKRDLADYYIRISEWLL
PQLKNRPVALVRAPEGITGELFFQKNADRLSIPGIETMGKEYTGHPMMLINNLEALIGAV
QMSTIELHTWNAVSKDLERPDRFILDLDPDPALPWKSMVEATQLTLTVLDELGLKSFLKT
SGGKGIHIVVPLTPKADWDAVKDFSHAIVKHIAKLLPERFSAVSGPKNRVGRIFIDYLRN
GLGATTICAYAPRTREGLPVSVPIFREEIKELKGANTWTIHNIHQRLAELDSDPWADLAK
TRQTITAQMRTRVGMKG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcggcactggacgagtacaaccgcaaacgcgacttcgatgccacgtccgagccc
tcgggcaacgaggcgaaaggcaggcgcggtgcgagcaaaaccaagacctcgacgaaggcc
gcgcatgccttgcagttctgcatccagaagcacgacgcgtcacgcctgcattacgatttc
cgcctggagctggacggcacgctgaaaagctgggcagtgcccaaaggcccgtccctggac
cccaaggccaagcgactggccgtccatgtcgaagaccacccgatcagttacgccacgttc
gaaggcagcatccctgaaggccattatggcgcaggcgatgtgattgtctgggaccgaggg
gtatggaagccgctgtccgaccctgctgaggcgtacaccaaaggcaggctgaaattcgag
ctgcaaggtgaaaagctcgcgggcgtgtggaacctggtcagaacccacatgcccggcaag
caggaacagtggtttttgatcaagcatcaggatgaattcgcccggcccgagagcgattac
gacgtcgtcaaagccgagccccacagcgtgttgagcgaacgcaccatcgttgagaaacag
gccgcgaaaaaatcgccgaaaaaatcctctgcaaaaactgctgaacccaaaccggcgtca
cccaaacccgtcgagaaagtcggcaaggcagcagcggctgaatcggcaacagcctcaaaa
aagtcgtcaggcaaaaccctgctggccaatgctgaacccgcagccatccccgacagcatc
aagccggagctggcgacgctggtggactctgcccccgaaggcgattggcgctacgagatc
aagtttgacggctaccgggtcatggccaggatcaacgacggcaaggtccagttgttcacc
cgcaacggccatgactggacccacaaactgcctcgtcaggccgaggcgctggccagcctg
gacttggagtccgcctggctggatggtgaaatggtggtggccaacgagcaaggggttccg
gatttccaatccctgcagaatgccttcgaggcgggcagcagcgacgccatcagctattac
ctgttcgacatgccctacctcaatggcatggacctgcgtcaggtcccggtggaacaacgc
cgagccgcactggccaaagtgctggagcgcagcgaagaccctgtgctgcgcttttccgag
gactttgccgaaacccctgatgccctgttgaacaccgcctgccagatgaagatggaaggc
ttgatcggcaagcggacgggcagcgcttacgtgtcccggcgcagtggcgactggatcaag
cttaaatgcaaacgtcggcaggaattcgtggtagtcgggttcaccgagcccaaaggcgca
cgcagcaagtttggcgccctgctgctgggtttgcatgatgccgacagcggcgagctgcgc
tatgcgggcaaggtcggcaccggcttcaacgaagccaccttgagcagcatccatcagcaa
ttgacgccgctggaggtcaaaaaacctgcggtgatcaacccgcccaccgggtttgaagcc
aagggcgtgcactggctcaaaccgcagctgctggccgaagtggcctttgctgaaatcacc
caggacggctcggtgcgccatgcggtgttccacggcctgcgcaccgacaagccagccagg
tcgatcaccgaggagcgccccgctactcccgccaggcagaaaaaaacagcaagcaaaacc
gctgcacactcagccaaagcgaaaaccacggcggccgaagcagaggctcagcccaaaccg
gagcccaaaccgaaacccaagtccaacgccaagcccaaagctgaagaaaccaagactacg
gagcccgcgctgacgggcaaggtgcggctcacccacccggaacggatcatcgacccggtc
agcggcgccaccaagcgtgatctggcggattactacattcgtatctcagagtggttgctg
ccacagctgaagaaccggcccgtagccctggtccgtgcaccggaaggcatcaccggcgag
ctattctttcagaaaaacgcagatcgcctgtcgattcccggcatcgaaaccatgggcaag
gaatacaccgggcatccgatgatgctgatcaataacctcgaagcgctgattggcgcggtg
cagatgagcactatcgaactgcacacctggaatgccgtgtccaaagaccttgaacggccg
gaccgattcatcctcgaccttgacccggacccggctctgccctggaaaagcatggtcgaa
gccacgcagctgaccctcaccgtgcttgacgagctgggcttgaagtcattcctcaagacc
agcggcggcaagggcattcacatcgtcgtgccgttgacccccaaggccgactgggatgcg
gtaaaggacttcagccatgcgatcgtcaaacacattgccaagctactgcccgaacggttt
tcagcggtgtcaggccccaagaatcgagtcggccggattttcatcgactacctgcgcaac
ggtttgggtgctaccacgatctgcgcctacgcgccccgcacccgtgaaggcctgcccgtg
tcggtgccgatctttcgagaggaaatcaaggaactcaaaggcgccaacacctggaccatt
cacaacatccaccagcgcttggcagagctggacagcgacccctgggcagacctggcaaaa
acccgacagaccatcaccgcccagatgcgcacgcgggtgggcatgaagggttga
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