Planctopirus limnophila: Plim_0681
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Entry
Plim_0681 CDS
T01225
Name
(GenBank) UDP-N-acetylmuramyl-tripeptide synthetase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
plm
Planctopirus limnophila
Pathway
plm00300
Lysine biosynthesis
plm00550
Peptidoglycan biosynthesis
plm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Plim_0681
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Plim_0681
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
plm01011
]
Plim_0681
Enzymes [BR:
plm01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Plim_0681
Peptidoglycan biosynthesis and degradation proteins [BR:
plm01011
]
Precursor biosynthesis
Amino acid ligase
Plim_0681
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
ADH_zinc_N_2
Motif
Other DBs
NCBI-ProteinID:
ADG66528
UniProt:
D5SR60
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Position
complement(890489..892144)
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AA seq
551 aa
AA seq
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MPPQHALPASLSLKDHLPTAELMGAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFL
EEAISRGAVGVVTSQVLPNCPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGK
TTVSWMTRALMAKSGYRTGLLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHL
AMELSSHSLDQSRAAALPLDCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIAL
HINDPGAASLASLVPAECRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRI
LGRHNIENALAALAAGLAWKVPFLSMAEALEEFRPVPGRMERCTWGEPFDIFVDYAHTPD
ALSRALCSLRGLTRGRLICVFGAGGDRDATKRPLLGRAASQADVAIVTSDNPRSENPEKI
IQQICDGVPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASHLPFDD
RRVVRELLENRSKESLNRLPPAKSFIANSYSASGCSDMAPASSPMGMALQTEAILPNPAA
VETDSLQRVSA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgccaccacagcatgctctcccggcatcactgagtctgaaagatcatctaccgaccgca
gagttaatgggggcgggtgacatctacttcaacgatgtcacactcgacagtcgtgagtgt
cgcccgaaaacattgtttgtggctgcaccaggtcgaaatagtcatggcagccagtttctc
gaagaggccatttcccgcggcgctgtgggagtggtgacttctcaagtcttaccgaattgc
ccgcttccccagtgtgtcgtggcgaatcctcgggcggcttatgcttatctctcgcaatcg
ctgtacggtcatcccgccagccgcctgagaatgatgggagtcacggggaccaatggaaaa
acgacagtcagttggatgacgagagcgctgatggccaaatccgggtatcggacgggctta
ttgggaaccgtggaatactttgatggttatcgtgcagagccctcggtattgacgactcct
gatgcgaaattgatggctttctggcagcatcgcatggtcagccgggggacaactcatctg
gccatggaactttcgagtcactctctggatcaatcgcgagccgcagcgttaccacttgat
tgtgcaattgttaccaatatcacgcacgatcatctcgattatcatggtgattttgccagt
tatcgcgaagccaaagcccggattctggatctcgttaagccaggcggaaccatcgcattg
catatcaacgacccgggagccgcctcgctggcgagtctggtgcctgcggaatgccgtctg
attcgctatggcgtgaatgtcgatgccgagctctcggctcagattctgagtgaatcctta
agcgggacgacattccgtgtgcagtaccagggccaggtgatgcagatgaagctgcggatt
ctggggcggcacaacatcgagaacgcactggcagctttagctgccgggctggcctggaaa
gttccctttttatcgatggcagaagccttggaagagtttcggccagtgccgggaagaatg
gaacgctgcacttggggtgaaccgtttgatatttttgtggattacgctcacacccctgat
gcattgagcagagcgttatgttcgctgcgcgggctgacgagaggccggttgatttgtgtc
tttggggctggcggagatcgcgatgccaccaaacggccactgctgggtcgtgctgccagc
caggccgatgtcgccatcgttaccagtgataatccgcgatcagaaaaccccgaaaagatc
attcagcagatttgtgatggggtgcctgctcaacaagtcgaagtcgtgattgaagtcgac
cgaaagctggcaattcaacatgccattgagcaggcgttgcccggtgacatgatactgatt
gccgggaagggacatgagagcgagcagattatcggagccagtcatctccctttcgatgat
cggcgagtggtgcgtgagctgctggaaaatcgatccaaggaatctttgaatcggttgcca
ccagccaaatctttcattgcaaactcttattcagcaagtggttgtagcgatatggctccc
gcttcttcgcccatggggatggctttacagacggaagccattctgcccaatcccgccgct
gtcgaaacagattccttgcagcgtgtgagtgcctga
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