Perognathus longimembris pacificus (Pacific pocket mouse): 125350681
Help
Entry
125350681 CDS
T08928
Symbol
Rif1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
KO
K11138
telomere-associated protein RIF1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
125350681 (Rif1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plop03032
]
125350681 (Rif1)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
125350681 (Rif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rif1_N
NICE-1
Motif
Other DBs
NCBI-GeneID:
125350681
NCBI-ProteinID:
XP_048201440
LinkDB
All DBs
Position
4:complement(68941264..69004158)
Genome browser
AA seq
2444 aa
AA seq
DB search
MTTPRPSPLAPLLETLEDPSASPGAQTDAYLTLTSRMTGEAGKEIIVQMEKNLPRLCEVL
KEHISSPNSELSCAALQALGFCFHNPKITIGLPEENTKELLLRVNDVIKNSEKNMCTRAL
WILSKQTISTEVISQLVSGIIDTLEILLNKGEQHSAVIVYEALNVIIRLIEQAPVQMGEE
SVRWAKLVIPLLVHSAQRIHLRGATALEMGMPLLLQKQQEIASITEQLMTTKLISELQKL
FINKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGTPMVKKIAFIAWKSL
IDNFSLNPDILCSAKRLKLLMQPLSSIHVKTEALALTKLEVWWYLVMRLGPYLPANFEQV
CVPLIQSTIIDNSASPRSSSSRLPTSPNLTPMTPVHKGASPYGGSITPRSSSSSNSSGMA
PISSIQLLGLEMLLHFLLGPEVLSFAKQQKLVLNLEPLEHPLISSPSFFSKHAHILITAV
HDSFVAVGKDASDAMVNAIWKELITLVKSVIESGNKKERPGSEVLTLILKSLESIVKSEV
FPASKTLVLMEITIKELPQKVLGSPAYQVANMDILNGTPALFLIQLFFNNNLLECGVADE
RFFLNLETLVGCVLSGPTSPLAFSDSVLNVINQNAKQLENKEHLWRMWHIIVTPLTELIN
QTNEVNQGDALEHNFSAIYSALVLPINHVFSERSFSTVTMKTLLRTWSELYKAFARCAAL
VATAEENLCCEELSSKILSSLEDGILLNVVFLDRTVHIITVMVNCIDFSPYNNKYQPQIK
SPQRSSDWSKKKKEPLGKLASLFKLLVRVMCSFHTLSFNEGHSDTLLAIGNSITSILSSV
LGHISLPSMIRKMFATLVRPVALFYENSKLDEAPKVYSCLNNKLEKLLGEIITCLQFSYT
GIYDTEFLEQLSPLLCVLFLHKNKQIRKQSALFWNATFAKVTMLIYPEELKPILREAKQK
LLLLLPGLERVEIMEESSGPYSDTAENSQLNVKISGMERKSSGKRDSFLAQTKDKKENIK
PSAKPKLQSSSSKLKNELLLEEEKSTDFVFIPPEEKEGKERILTEHQKEVLKTKRYDIPA
LYNNLDVSQDTLFSTQFSQEDSGLSPTLTETSKGDPKMMIKGENVKMENKVVTENCCMGE
HLQKASLSNRCGSVAETNPEILSSNNDNREITLVSSKKTTAECTSSVENSLVVNSSSVSN
SIISGTLPQPTSRRQTFITLEKFDVSGNRPFSPSPLNNISSTVGVKTNQENMSKTDPPTK
TKKREVTHSKFDTEKIVNGIKRLGRRASKAEQSENKTSDALVRSEPEEHTQESIKGMITL
ENNLPNMVNSTGCISDSPIHFPESTVENETIKPKPVTENIVLENNITEEKNIGMNLESKE
NTPPAVILSDPMGNEDNQVQIAPNPKILRRSLRRRAETVEPTTNSQDKENSLQKKETPKE
EEKTLQMDPVQIKEEVLLKEKLTSQQTIQENLIVNGNLHEKICGETSANAEIDPNKREPD
FVNSNSEGHASQDTVDKSFEKPLRGRTRYQTRRASQGLLSSIENSESDSSEAKDESCRKR
RSGKWKNRSNDSIDFEEQEERIEEQSSKIENQLHDYNSVSGADVEIKSQVCEKDESCTVT
LQDSTIASDLLHVSHDTPNTHEGKSKNGRYAKCSLASPSIPELHLRTRNASKKLHKKDCD
TNMRECSKIETSNMSVISKDIVSKLECQHKRSRRVRRSKACDCCGEKSQPQEKSLELENT
ENCDTEVETKKTDVHTPQTKTETSGTNICSEVISDEHHSVNSHFGVENDTSKDLLSVSET
DLKKSINKSVPSETSNNEEITPHVDSNEATSPSQEPSKKRFKAMGPCLDDDKDISQEKSL
DTEKPETSPQRELSDENGEGITHARVAEPNAKVEAMELGVVESDEIESSYSEKESAKADT
PEENKSDKPKADIFEELSEAKAAVEDFNTCIGLSDNNTPENINTHSGVSDQIEGEQGRSN
DSGSCLESEEMNVEDNEGRVMGQVNTEVDVVKETEDKDLAQETSTAEEAETERSSTETDS
FIPDTVQMSTEERKIASNEIETSIELNKCEETKLEDNQMEVGNDTSQVLISEKVKEPSQS
LAPEIPVSELVTENSVSPEKLKEFDQLLVSANESPTGTHTRCVWSPLASPSTSILKRGLK
RPQEDEVPSPINKVRHVSFADPIYQAGLADDIDRRSSVRSHSSNSSPTIKSVKTSPTAQS
KHNTTSAKGFLSPGSRSSKFKSSKKCLITEMAKESMLSPAESVYPALVNCAAPIDIILPQ
ITSNIWARGLGQLIRAKNIKTIGDLSTLTASEIKTLPIRSPKVTNVKKALRIYHEQQVKS
RGLEEIPVFDLSDKAINGIETKPLSTDEEKLASDLLDPVPLETPLSKNLMAQISALALQL
NSEDLHSYSGSQLFEMHAKLGSMANLIITNLQSRWKSSANENSI
NT seq
7335 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccccaagacccagccccctcgcgccgctcctggagacgctggaggacccttcc
gcctcccctggggcgcagaccgacgcgtacctgaccctgaccagtcgtatgactggggaa
gcaggaaaagaaatcattgtacaaatggagaaaaatcttcctcggctgtgtgaagtttta
aaggagcacatttctagtccaaactcagagctgagttgtgctgctcttcaggccttgggg
ttttgtttccataatcccaaaattaccattgggttaccagaggaaaatactaaggaactg
cttttaagagtgaatgatgttattaagaattcagaaaaaaatatgtgtaccagggcactt
tggatattatccaaacagacgatttccactgaggttattagccaattggtatctggtata
attgacacattagaaatactacttaataaaggagagcagcattctgctgttattgtttat
gaagcattaaatgttattataaggctaatagaacaagcaccagttcaaatgggagaagaa
tcagtgagatgggcaaaattggtcatcccattattggttcattcagcacagaggatccat
ttacggggagccactgctttggagatgggaatgccactgttgcttcagaaacaacaagaa
atagcatctattacagagcagcttatgactactaaattgatctcagaactccaaaaacta
tttatcaacaaaaatgagacctatgtattaaaattatggcctctgtttgtcaaacttctt
ggaaagaccctgcatcgaagtgggagtttcatcaattctttgttacagctggaagaactg
ggatttcgtagtggaacccccatggttaaaaaaattgcttttattgcttggaagagctta
atagataatttttctttaaatccagatatactttgtagtgcaaaaagactcaagttgtta
atgcagcctttgagttccatccatgtgaaaacagaagctctagcattaacaaaactagaa
gtctggtggtacttagtgatgagacttggaccatatctccctgctaattttgaacaggtt
tgtgtgcccctgattcagagtacaatcattgataatagtgcttcacctcgaagcagctca
tctcgcttacccacttctccaaatttaactcctatgactcctgtacacaaaggtgcttcc
ccatatggaggttctataaccccgcgctcaagctcaagttcaaattcaagtggaatggcc
ccaatatcttctattcaacttttgggactagaaatgttgcttcactttttgttgggtcca
gaagtcttgagttttgctaagcaacagaaacttgtattgaacttagaaccacttgaacat
ccgttaatcagcagcccttcttttttttccaaacatgcacatatcctcatcactgctgtt
catgatagctttgttgcagttgggaaagatgcttcagacgcaatggtcaatgctatctgg
aaagagctaattaccttggtgaagtctgtgattgagtcaggtaacaaaaaagagaggcca
ggttctgaagttttaaccctaatactaaagtctttggaaagcatagttaagtcagaagta
tttcctgcatcaaaaacattagtcctcatggaaattacaattaaagaacttcctcagaaa
gtattaggttcacctgcatatcaggttgctaatatggatattcttaatggaactccagct
ttgttcttaattcagttatttttcaacaataatcttttggaatgtggtgtagcagatgaa
aggtttttcctcaatctggaaacacttgtaggctgtgtgctttctggtccaacatcacca
ctagctttcagtgattctgtattaaatgttattaaccaaaatgcaaagcagttggaaaac
aaggagcatctctggagaatgtggcatattatagttaccccattaactgaactgatcaat
cagaccaatgaagtaaatcagggtgatgccttagagcacaattttagtgccatctattct
gctttggttttaccaataaatcatgttttttcagaacggagtttttctacggttaccatg
aagactttactcagaacttggtcggaattatacaaagcatttgctcgctgtgctgctttg
gtggcaacagcagaagagaatttgtgctgtgaagaactttcttccaaaatactctctagt
ttggaagatggcattcttttgaatgtggtcttcttggacagaactgtacatattattact
gtgatggttaattgcattgacttttcaccgtataataataaatatcaacctcaaattaag
tcaccacagagatcttcagattggtccaaaaagaagaaagagcctctaggaaaattagct
tcattatttaagctgcttgtgagagttatgtgttctttccatactctgagcttcaatgaa
ggacattctgatacattgcttgctattggaaactcaatcaccagcattctttccagtgtg
cttggacatatttctttgccatctatgattcgaaaaatgtttgcaactttagtaagacct
gtggcattattttatgaaaattcaaagcttgatgaagctcctaaagtatatagttgtctg
aataacaagttagaaaagcttctaggagaaattattacttgtctacagttcagctacact
ggaatttacgatactgagtttcttgaacagctctccccactgctatgtgtactatttctg
cataagaataagcagattcggaaacagagtgctctgttttggaatgctacatttgctaaa
gtgacaatgttgatttatcctgaggaattgaaaccaatattaagagaagccaaacaaaag
cttttgcttctgttgcctggtttggaaagagttgaaataatggaagaatccagtggacca
tactcagatacagcagaaaattcacaattaaatgtgaagataagtggcatggaaagaaaa
tcaagtggaaaaagagactcctttttggcacaaacaaaggataaaaaagaaaatatcaaa
ccatcagccaaaccgaaacttcaatcttcatcttcaaaattaaagaatgaattgctttta
gaagaggaaaagtcaactgacttcgtttttatacccccagaagaaaaagagggaaaagaa
agaatactaactgaacatcaaaaagaagtactcaaaacaaagaggtatgacattcctgca
ttgtataataatttggatgtttcacaagataccttattttccactcaatttagtcaagaa
gactctgggctaagtcctactttaacagaaacatcaaagggagatcctaagatgatgata
aagggggagaatgtaaaaatggagaataaagttgtcacagaaaactgttgtatgggtgaa
catctccagaaggcttctttgtccaataggtgtggttctgttgctgaaacaaacccagaa
atacttagcagtaataatgacaacagagaaatcactttagtttcatcaaagaaaactaca
gctgaatgtacatctagtgtggaaaactcacttgttgtcaacagtagctcagtttctaat
tccattatttctggaacactccctcagcctacaagtcgaaggcaaacatttatcacattg
gagaagtttgatgtttcaggaaatagacctttcagtccatcacccttaaataatatttca
tcgactgttggagtgaaaactaaccaggaaaacatgagtaaaacagaccctccaacaaaa
acaaagaaaagagaagtaacccattcaaagtttgatacagaaaaaatagtgaatggaatt
aagaggttaggccggagagctagtaaagcagaacaatcagaaaacaaaacatctgatgcc
ttagtcagatctgaaccagaggagcatactcaggaatctattaaaggcatgataacctta
gaaaataacttgcccaatatggttaattcaacagggtgtatatcagatagcccaattcat
tttcctgaatctacggtagagaatgaaactataaaacctaagccagtaacagaaaatatt
gtattggaaaacaatattacagaagagaaaaacatagggatgaatttagaatccaaagaa
aatacaccacctgcagtaatactgtcagatccaatgggaaatgaagataatcaggttcag
atagctccaaatccaaaaatccttagacgatctttaaggcgtcgtgcagaaacagtggag
cctactactaatagccaagataaagaaaatagtcttcaaaaaaaggaaacacctaaggaa
gaagaaaaaactctccagatggatccagtgcaaataaaagaggaagtattacttaaagaa
aaactgacttctcaacaaactatacaggaaaatctaattgtgaatggtaatttacatgag
aagatttgtggagaaaccagtgctaatgctgaaattgacccaaataaaagagaaccagat
tttgtgaatagtaattctgaggggcatgctagccaggacactgtagacaaatcatttgag
aaacctttaaggggacggacacgttaccaaacaagaagagcatctcagggtttgctttct
agcattgaaaactcagaatcagatagttctgaggcaaaagatgaaagttgtagaaagagg
agatctggaaaatggaaaaacagaagcaatgacagtattgactttgaagaacaagaagaa
agaatagaagagcaaagttcaaaaattgaaaatcagttgcatgattataattctgtttct
ggagcagatgtagagataaaatctcaggtatgtgaaaaggatgaaagttgtactgtaaca
ctccaggattctacaatagcttcagatttattgcatgtttctcatgacacaccaaataca
cacgaaggaaaaagtaagaatggcagatatgcaaaatgctcccttgcaagtccatctata
ccagaattacatctaaggactagaaatgctagtaaaaaattacataagaaagattgtgat
actaatatgagagaatgctcaaaaatagagacttcaaacatgtctgtgatttccaaagac
attgtctcaaaacttgaatgccaacacaagagaagtcggagggtgaggagatctaaagcc
tgtgactgctgtggggaaaaatcacaacctcaggaaaaatcactcgagttagagaacaca
gaaaattgtgatacagaggttgaaacaaaaaagactgatgtacacacacctcagactaaa
acagaaacctctggaactaatatatgttctgaagtaatttcagatgaacatcacagtgtg
aattctcattttggtgttgagaatgatactagtaaggatttattgagtgtatctgaaaca
gacttgaaaaaaagcattaataaatctgtcccttctgaaacttcaaataatgaagaaata
actccccatgtggattctaatgaagcaacatctcccagccaagagccatcaaagaaaaga
tttaaggccatgggcccatgtttagatgatgacaaggatatttcccaggaaaagtcttta
gatactgaaaaaccagaaacttccccccaaagagaactgagtgatgaaaatggtgaagga
attacacacgcacgagtagcagaacccaatgcaaaagtagaagctatggaattgggtgtt
gtagaaagtgatgaaatagaatctagctactccgaaaaagagagtgccaaagctgatact
cctgaagaaaataaaagtgacaaacctaaagcagatatatttgaagaactgagtgaagca
aaagcagcagttgaggattttaatacatgtattggtctttctgataataacacacctgaa
aacataaatacccattctggggtttctgaccaaatagaaggggaacaaggtaggagtaat
gactctggttcatgtttggaatctgaagaaatgaatgttgaagataatgagggcagagta
atgggtcaggtgaatactgaggttgatgttgtcaaggaaacagaggacaaggacttggct
caggaaacctctacagcagaagaagctgaaacagaaagatcaagtacagagactgacagt
ttcattcctgatacagttcaaatgagcacggaagaaagaaagattgcctctaatgaaatt
gaaacaagtattgagcttaataaatgtgaagaaacaaaattagaagacaatcagatggaa
gtaggaaatgatacttcacaagttctcatttcagagaaagtgaaggagccatcacagtct
ttggcacctgaaatacctgtctctgagttggtaacggaaaacagtgtatctcctgaaaaa
ctaaaggaatttgatcagttacttgtgtcagccaatgaaagtcctactggcacacataca
cgctgtgtctggtctcctttagcttctccatccactagcattttaaagagagggttaaaa
agaccccaagaagatgaagtcccatcacccattaataaggttcgccacgtctcatttgca
gatccaatatatcaagcaggattggcagatgatattgataggcgatctagtgtaaggtct
cattcttccaatagttctcccacaataaaaagtgttaaaacttcacctactgcacagtct
aagcataataccacttcagccaaaggatttctgtccccaggatcacgtagctctaaattt
aagagctcaaagaagtgtttaattacagaaatggccaaagaatccatgctgtcgccagca
gaaagtgtttacccagctttggtgaactgtgcagcaccaattgacatcattttacctcag
attacatcaaacatatgggctagaggcctaggacaacttatcagagccaagaatataaaa
acgattggtgatttgagtactcttacagcatctgaaataaaaactcttcctatccgttcc
ccaaaggtgacaaatgtaaagaaggctctcagaatatatcatgagcaacaggtgaagtct
cgtggacttgaagagattccagtttttgacctttctgacaaggcaataaatggaatagaa
actaaacctctctcaactgatgaagagaaactagcctcagatttgcttgatcctgtacct
ttagaaactccattgtctaaaaatcttatggcacagattagtgctcttgctcttcagctg
aattcagaagatctccacagttattcaggaagtcagctatttgaaatgcatgcgaaactt
ggttctatggcaaacttgataataacaaatctacagtcacgttggaaatcctcagctaat
gaaaattctatttaa
DBGET
integrated database retrieval system
