Perognathus longimembris pacificus (Pacific pocket mouse): 125350952
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Entry
125350952 CDS
T08928
Symbol
Rxra
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-alpha
KO
K08524
retinoid X receptor alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03320
PPAR signaling pathway
plop04148
Efferocytosis
plop04151
PI3K-Akt signaling pathway
plop04659
Th17 cell differentiation
plop04919
Thyroid hormone signaling pathway
plop04920
Adipocytokine signaling pathway
plop04928
Parathyroid hormone synthesis, secretion and action
plop04932
Non-alcoholic fatty liver disease
plop04976
Bile secretion
plop05160
Hepatitis C
plop05200
Pathways in cancer
plop05202
Transcriptional misregulation in cancer
plop05207
Chemical carcinogenesis - receptor activation
plop05216
Thyroid cancer
plop05222
Small cell lung cancer
plop05223
Non-small cell lung cancer
plop05226
Gastric cancer
plop05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125350952 (Rxra)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125350952 (Rxra)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
125350952 (Rxra)
09152 Endocrine system
04920 Adipocytokine signaling pathway
125350952 (Rxra)
03320 PPAR signaling pathway
125350952 (Rxra)
04919 Thyroid hormone signaling pathway
125350952 (Rxra)
04928 Parathyroid hormone synthesis, secretion and action
125350952 (Rxra)
09154 Digestive system
04976 Bile secretion
125350952 (Rxra)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125350952 (Rxra)
05202 Transcriptional misregulation in cancer
125350952 (Rxra)
05207 Chemical carcinogenesis - receptor activation
125350952 (Rxra)
09162 Cancer: specific types
05226 Gastric cancer
125350952 (Rxra)
05216 Thyroid cancer
125350952 (Rxra)
05222 Small cell lung cancer
125350952 (Rxra)
05223 Non-small cell lung cancer
125350952 (Rxra)
09172 Infectious disease: viral
05160 Hepatitis C
125350952 (Rxra)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
125350952 (Rxra)
09167 Endocrine and metabolic disease
04932 Non-alcoholic fatty liver disease
125350952 (Rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125350952 (Rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
plop03310
]
125350952 (Rxra)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
125350952 (Rxra)
Nuclear receptors [BR:
plop03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
125350952 (Rxra)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
125350952
NCBI-ProteinID:
XP_048201733
LinkDB
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Position
1:160520251..160603121
Genome browser
AA seq
467 aa
AA seq
DB search
MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAAPSLHPSLGPGLGSPLGSPGQLHSPISTLS
SPINGMGPPFSVISXPMGPHSMSVPTTPNXGFGTGSPQLNSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRSSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaaacacttcctgccgctcgacttctccacccaggtgaactcctcatccctc
aactccccgacgggccgaggctccatggctgccccttcgctgcacccgtccctggggccc
ggcctgggctcccccctgggctctccggggcagctgcactctcccatcagcaccctcagc
tcgcccatcaacggcatgggcccgcccttctccgtcatcagcntccccatgggcccgcac
tccatgtcggtgcccaccacgcccaacnctggcttcggcacgggcagcccccagctcaac
tcgcccatgaaccccgtcagcagcagcgaggacatcaagccccccctgggcctcaatggc
gtcctcaaggtccctgcccacccctcaggaaacatggcgtccttcactaagcacatctgc
gccatctgtggagaccgctcctcaggcaagcactatggggtgtacagctgcgagggctgc
aaaggcttcttcaagaggacggtgcgcaaggacctgacctacacctgccgggacaacaag
gactgcctgatcgacaagcgccagcggaaccgctgccagtactgccgctaccagaagtgc
ctggccatgggcatgaagcgggaagccgtgcaggaggagcggcagcgcggcaaggaccgg
aatgagaacgaggtcgagtccacgagcagcgccaacgaggacatgcccgtggagaagatt
ctagaagctgagctggcagtcgagcccaagaccgagacctatgtggaggccaatatgggt
ctgaaccccagctcgcccaacgaccccgtcaccaacatctgccaagccgcagacaagcag
ctcttcaccctcgtggagtgggccaagagggtcccgcacttctctgagcttccgctggac
gaccaggtcatcctgctgcgggcaggctggaacgagctgctcatcgcctccttctcgcac
cggtccatcgccgtgaaggacgggatcctcctggccaccgggctgcacgtccaccgcagc
agcgcccacagcgcaggggtgggcgccatcttcgacagggtgctgacagagctggtgtcc
aaaatgcgggacatgcagatggacaagacggagctgggctgcctgcgtgccatcgtcctc
ttcaaccctgactccaaggggctctcgaacccggccgaggtggaggctctgagggagaag
gtgtacgcgtcgctggaggcttactgcaaacacaaatacccggagcagccgggcaggttc
gctaagctcctgctccgcctgccggctctgcgctccatcgggctcaagtgcctggagcac
ctgttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgcta
gaggccccgcaccagatgacctag
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