KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125350952
Entry
125350952         CDS       T08928                                 
Symbol
Rxra
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor RXR-alpha
  KO
K08524  retinoid X receptor alpha
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03320  PPAR signaling pathway
plop04148  Efferocytosis
plop04151  PI3K-Akt signaling pathway
plop04659  Th17 cell differentiation
plop04919  Thyroid hormone signaling pathway
plop04920  Adipocytokine signaling pathway
plop04928  Parathyroid hormone synthesis, secretion and action
plop04932  Non-alcoholic fatty liver disease
plop04976  Bile secretion
plop05160  Hepatitis C
plop05200  Pathways in cancer
plop05202  Transcriptional misregulation in cancer
plop05207  Chemical carcinogenesis - receptor activation
plop05216  Thyroid cancer
plop05222  Small cell lung cancer
plop05223  Non-small cell lung cancer
plop05226  Gastric cancer
plop05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:plop00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    125350952 (Rxra)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    125350952 (Rxra)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    125350952 (Rxra)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    125350952 (Rxra)
   03320 PPAR signaling pathway
    125350952 (Rxra)
   04919 Thyroid hormone signaling pathway
    125350952 (Rxra)
   04928 Parathyroid hormone synthesis, secretion and action
    125350952 (Rxra)
  09154 Digestive system
   04976 Bile secretion
    125350952 (Rxra)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125350952 (Rxra)
   05202 Transcriptional misregulation in cancer
    125350952 (Rxra)
   05207 Chemical carcinogenesis - receptor activation
    125350952 (Rxra)
  09162 Cancer: specific types
   05226 Gastric cancer
    125350952 (Rxra)
   05216 Thyroid cancer
    125350952 (Rxra)
   05222 Small cell lung cancer
    125350952 (Rxra)
   05223 Non-small cell lung cancer
    125350952 (Rxra)
  09172 Infectious disease: viral
   05160 Hepatitis C
    125350952 (Rxra)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    125350952 (Rxra)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    125350952 (Rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:plop03000]
    125350952 (Rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:plop03310]
    125350952 (Rxra)
Transcription factors [BR:plop03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    125350952 (Rxra)
Nuclear receptors [BR:plop03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   125350952 (Rxra)
SSDB
Motif
Pfam: Hormone_recep Nuc_recep-AF1 zf-C4
Other DBs
NCBI-GeneID: 125350952
NCBI-ProteinID: XP_048201733
LinkDB
Position
1:160520251..160603121
AA seq 467 aa
MDTKHFLPLDFSTQVNSSSLNSPTGRGSMAAPSLHPSLGPGLGSPLGSPGQLHSPISTLS
SPINGMGPPFSVISXPMGPHSMSVPTTPNXGFGTGSPQLNSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRVPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRSSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacacttcctgccgctcgacttctccacccaggtgaactcctcatccctc
aactccccgacgggccgaggctccatggctgccccttcgctgcacccgtccctggggccc
ggcctgggctcccccctgggctctccggggcagctgcactctcccatcagcaccctcagc
tcgcccatcaacggcatgggcccgcccttctccgtcatcagcntccccatgggcccgcac
tccatgtcggtgcccaccacgcccaacnctggcttcggcacgggcagcccccagctcaac
tcgcccatgaaccccgtcagcagcagcgaggacatcaagccccccctgggcctcaatggc
gtcctcaaggtccctgcccacccctcaggaaacatggcgtccttcactaagcacatctgc
gccatctgtggagaccgctcctcaggcaagcactatggggtgtacagctgcgagggctgc
aaaggcttcttcaagaggacggtgcgcaaggacctgacctacacctgccgggacaacaag
gactgcctgatcgacaagcgccagcggaaccgctgccagtactgccgctaccagaagtgc
ctggccatgggcatgaagcgggaagccgtgcaggaggagcggcagcgcggcaaggaccgg
aatgagaacgaggtcgagtccacgagcagcgccaacgaggacatgcccgtggagaagatt
ctagaagctgagctggcagtcgagcccaagaccgagacctatgtggaggccaatatgggt
ctgaaccccagctcgcccaacgaccccgtcaccaacatctgccaagccgcagacaagcag
ctcttcaccctcgtggagtgggccaagagggtcccgcacttctctgagcttccgctggac
gaccaggtcatcctgctgcgggcaggctggaacgagctgctcatcgcctccttctcgcac
cggtccatcgccgtgaaggacgggatcctcctggccaccgggctgcacgtccaccgcagc
agcgcccacagcgcaggggtgggcgccatcttcgacagggtgctgacagagctggtgtcc
aaaatgcgggacatgcagatggacaagacggagctgggctgcctgcgtgccatcgtcctc
ttcaaccctgactccaaggggctctcgaacccggccgaggtggaggctctgagggagaag
gtgtacgcgtcgctggaggcttactgcaaacacaaatacccggagcagccgggcaggttc
gctaagctcctgctccgcctgccggctctgcgctccatcgggctcaagtgcctggagcac
ctgttcttcttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgcta
gaggccccgcaccagatgacctag

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