Perognathus longimembris pacificus (Pacific pocket mouse): 125353345
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Entry
125353345 CDS
T08928
Symbol
Rbck1
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04217
Necroptosis
plop04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
125353345 (Rbck1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125353345 (Rbck1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125353345 (Rbck1)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
125353345 (Rbck1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
125353345 (Rbck1)
Multi subunit Ring-finger type E3
LUBAC complex
125353345 (Rbck1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_UBOX
zf-RING_5
IBR
zf-C3HC4_2
zf-C3HC4
zf-RanBP
zf-RING_11
zf-C3HC4_4
ubiquitin
DUF5959
Motif
Other DBs
NCBI-GeneID:
125353345
NCBI-ProteinID:
XP_048204908
LinkDB
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Position
6:complement(66370663..66384783)
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AA seq
506 aa
AA seq
DB search
MDEKTKKAEEMALSLARAVAGGDEQAAVKCAIWLAEQRVPLRVQLKPEVSLTQDIRLSVS
VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPTLQQWVIGQRLARDQETLHSHGVR
RNGDSAYLYLLSACNTSLNPQELQRQRQLRMLEDLGFKDLTLQPRGPREPGLPKPGAPQE
AGRPGAEPLPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDDEERARLAGEE
EALRQYQQRKQQQQEGNYQQHVQLEQRSLVLNTEPAECPVCYSALAPGEAVVLRECLHTF
CRECLQGTIRNSQEAEVSCPFIDSTYSCPGKLLEREIRALLSPEDYQRFLDLSVSLAETR
SAFSYHCKTPDCRGWCFFEDDVNEFTCPVCFHVNCLLCKAIHERMNCKEYQDDLALRAQN
DMAARQTTEMLRVMLQQGEAMHCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPG
GPGDTSGGCRCRVNGIPCHPSCQNCH
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaagacaaagaaagcggaggagatggccctgagcctggcccgggcagtggcc
ggcggagatgagcaagcagctgtgaaatgtgccatctggctagcagagcagcgggtgccc
ctgcgggtacaactgaagcccgaggtctccctgactcaggacatcaggcttagcgtgagc
gtggaagacgcccagatgcacactgtgacaatctggctcactgtacggccagacatgacc
gtggcctccctcaaggacatggtcttcctggactacggctttccacccaccctgcagcag
tgggtgattgggcaacggctggcacgagaccaggagaccctgcattcccatggggtgcgg
cggaacggggatagcgcctacctgtacctgctgtcggcctgcaacacctccctcaacccc
caggagctgcagcggcagcggcagctccggatgctggaagatctgggcttcaaggatctc
acgctgcagccccgcggtcctcgggagcctggccttcccaagcccggagcccctcaggaa
gcaggacggccaggggcagagcccctgccggtgggctggcagtgcccggggtgcaccttc
atcaacaagcccacgagacccggctgcgagatgtgctgcagggcacggcccgaggcctac
caggtccccgcatcctaccagccggacgacgaggagcgggcgcgactggctggtgaggag
gaagcgctgcgccagtaccagcagcggaagcagcagcagcaggaggggaactaccagcag
cacgtccagctcgagcagcggagcctggtgctgaacaccgagcccgccgagtgcccggtg
tgctactcggcgctggcgccgggcgaggccgtggtgctgcgggagtgtctgcacaccttc
tgcagggagtgcctgcagggcaccattcgcaacagccaggaggctgaggtctcctgcccc
ttcattgacagcacctactcctgtcctggcaagctgctggagagggagatccgggcgctc
ctgtcccctgaggactaccagcgcttcctggacctcagcgtctccctggcagagacccgc
agcgccttcagctaccactgcaagacccctgactgcaggggctggtgtttctttgaggac
gatgtcaacgagttcacctgcccggtgtgcttccatgtcaactgcctgctctgcaaggcc
atccacgagcgcatgaactgcaaggagtatcaggacgacctggcccttcgggctcagaat
gacatggctgcccggcaaacgacagagatgctgagggtgatgctgcagcagggcgaggcc
atgcactgcccgcagtgccagattgtggtgcagaaaaaggacggctgcgactggatccgc
tgcaccgtgtgccacacagagatctgctgggtcaccaagggcccacgctggggccccggt
ggcccaggggacaccagtgggggctgccgctgtcgggtcaatgggattccttgccacccc
agctgtcagaactgccactga
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