Planctomyces sp. SH-PL14: VT03_22120
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Entry
VT03_22120 CDS
T04354
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pls
Planctomyces sp. SH-PL14
Pathway
pls03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VT03_22120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pls03400
]
VT03_22120
Enzymes [BR:
pls01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VT03_22120
DNA repair and recombination proteins [BR:
pls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VT03_22120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMV20612
UniProt:
A0A142X1L6
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All DBs
Position
5703043..5705739
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AA seq
898 aa
AA seq
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MASAQSQLKEYKRKRDFHKTSEPAGKSSRHRSTKKGLAFVVQKHDASHLHYDFRLEWDGV
LKSWAVPQGPCLDPSLKRLAVQVEDHPLEYGTFEGIIPPGQYGGGTVIVWDNGTWEPLGD
AAEGLRNGKLKFHLHGEKLTGGWTLVRMRRKPGEKKDNWLLIKERDDAARPLKERDIVKD
EPASVLSGVTIGEMAEEPPAEWNSEGPKTGRKSRPTSKTTRSKPAAKPRTAAKSRTSGDK
FPKSIQPELATLVEAPPAGDDWLHEIKLDGYRVVAFVHKDKVQLKTRNDLDWSHRFPEIA
QDLQRRFHGEDLVFDGEVCAVDDEGVTRFGMLQEALSDSQTDGLVYYVFDLLWRDGTDLR
GKSLEVRKDQLAELLGNRPHGRILYSDHQVGQGDKLFRKAADMGLEGIVSKRRDQPYLSG
RGGNWVKSKISQQDEFVIGGFTDSTSATRRLGALLIGYHDNGEFKYAGKVGTGFTEAMTA
DLRERLVTRESDESPFADRVTGAGRGVHWVDPNLVAQIGFTQWTRDGRLRHPVFQGLRED
KPARSVKRDIPKEAPAMEEAPRKTKSSPGGERKPANGTARKAPARRRPTQHHSGPELSAA
DQKQLEQLHLTHPEKVLYPAEGITKLDLVEFYAAVAEWMLPHIENRPLSLVRCPDGVGGP
RFFQKHAAGGTPDALKRIPIREKDETEDYLYIDSLAGLLSTCQMGTLEIHPWGSRCDDIE
KPDRLIFDIDPDEGLAWSKVVGAAREVRDRLQDLGLESFLKVTGGKGLHVVAPIVRRGEW
PEIKAFTRGFVRQMAADDPRAYTTNMSKSERRGKIFLDYLRNDRGATAVAPYSTRARDEA
SVAVPIAWTQLTPQMRSNHFTMKNLTTTLARRRTDPWEEMLTLRQSLTAAMRKSVEET
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggctcaatcacagctcaaggaatacaagcggaaacgggacttccacaaaacc
agcgaaccggcggggaagtcgtcccgacaccgttcgacgaagaagggactcgcctttgtc
gttcagaaacatgacgccagccacctccactacgacttccgtctcgaatgggacggcgtc
ctgaaaagttgggccgtcccgcagggcccgtgcctcgacccctcgctgaaacgcctggcc
gtccaggtggaagaccacccgctggaatacggcaccttcgaagggatcatcccgccgggg
cagtacggcggcggcaccgtcatcgtctgggacaacggcacctgggagccgcttggcgac
gcggcggaaggtctgaggaacggcaagctcaagttccatctccacggcgagaagctgacg
ggcggctggaccctcgtccggatgcgccgcaagccgggggagaagaaggacaactggctc
ctcatcaaggagcgggacgacgcggcccggccgctgaaggagcgggacatcgtgaaggac
gaaccggcgagcgtcctcagcggtgtcacgatcggcgagatggccgaagagccgccggcc
gagtggaactccgaaggcccgaagaccggccgcaagtcccgcccgacttcaaagacaacc
cgatccaagcccgcggccaagcccaggactgcggcgaagtccaggacgtcgggcgacaag
ttcccgaagtcgatccagcccgaactggcgacgctcgtcgaagccccgcccgcgggggac
gactggctgcacgagatcaagctcgacggctaccgcgtcgtcgccttcgttcataaggac
aaggtccagctcaagacgcggaacgacctcgactggtcgcaccgcttcccggagatcgcc
caggacctccagcggcggttccacggcgaggacctggtcttcgatggcgaagtgtgtgcg
gtcgatgacgaaggggtgacgcgtttcgggatgctccaggaggcactcagcgacagccag
accgacgggctcgtctactacgtcttcgacctcttgtggcgggacggaacggacctccgc
gggaagtcgctggaggtccgcaaggaccagctcgcggagctcctcggcaaccgtcctcac
ggccggattctctattcggatcaccaggtggggcagggcgacaaactgtttcggaaggcg
gccgatatggggctggaagggatcgtctccaagcgccgcgaccagccatatctctccggg
cgcggcggcaactgggtcaagtccaagataagccagcaggacgagttcgtcatcggcggt
ttcacggattcgacctccgcgacccgccgtcttggggcgctcctcatcggctatcacgac
aacggcgagttcaagtacgccggcaaagtcgggaccggcttcaccgaggctatgacggcg
gatctccgggaacggctcgtgacccgcgagagcgacgagtccccgttcgcggaccgcgtc
accggagcggggcggggcgtccactgggtcgatccgaacctcgtcgcccagatcggtttc
acgcagtggacccgcgacggccgcctgcggcacccggtcttccagggcctgcgggaagac
aagccggcccgttcggtgaaacgcgacattccgaaggaggccccggcgatggaggaagca
ccgcgcaagacaaagtcgtccccgggtggtgaacgaaagcccgcaaacgggaccgccagg
aaagctccggccaggcgacgccccacccagcaccacagcggccccgaactctccgcggcg
gaccagaagcagctcgaacagctccacctcacgcatcccgagaaggtcctctatcccgcg
gaagggatcaccaagctcgacctcgtagagttctacgccgcggtcgcggagtggatgctg
ccgcacatcgagaaccggccgctgagcctcgtccgctgcccggacggcgtcggcggtccg
cggttcttccagaagcacgccgccggcggcacccccgacgccctcaagcggatcccgatc
cgggagaaggacgaaacggaggactacctctacatcgacagcctcgcggggctcctctcg
acgtgccagatgggaacgctcgagatccacccctggggctcccgctgtgacgacatcgag
aagcccgaccgcctgatcttcgacatcgaccccgacgaaggtctcgcctggtccaaggtc
gtcggagccgcccgcgaggtgcgggatcgcctccaggatctgggcctcgagagctttttg
aaggtgacaggagggaaggggctccacgtcgtcgccccgatcgtccgccgcggcgagtgg
ccggagatcaaagccttcacccgcggcttcgtccgacagatggcggccgacgatccccgc
gcctacacgacgaacatgagcaagagcgaacgccgcggaaagatcttcctcgactacctg
cgaaacgaccgcggcgccaccgccgtcgccccctactccacccgagccagggacgaagcc
tccgtcgcggtcccgatcgcctggacgcagctcaccccgcagatgcgctcgaatcacttc
accatgaagaacctcaccaccaccctcgcgcggcggaggaccgacccctgggaagagatg
ctcacgctccggcagtcgctcaccgccgccatgcgaaagagcgtcgaggaaacctga
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