Paenibacillus lutimineralis: EI981_17880
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Entry
EI981_17880 CDS
T06479
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
plut
Paenibacillus lutimineralis
Brite
KEGG Orthology (KO) [BR:
plut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plut03032
]
EI981_17880 (topA)
03400 DNA repair and recombination proteins [BR:
plut03400
]
EI981_17880 (topA)
Enzymes [BR:
plut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EI981_17880 (topA)
DNA replication proteins [BR:
plut03032
]
Prokaryotic type
DNA Topoisomerases
EI981_17880 (topA)
DNA repair and recombination proteins [BR:
plut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EI981_17880 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
RNA_POL_M_15KD
Auto_anti-p27
Toprim_4
zf-ribbon_3
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AZS16125
UniProt:
A0A3Q9ICJ1
LinkDB
All DBs
Position
complement(4048806..4050905)
Genome browser
AA seq
699 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQTGVDVENDFNPKYITIRGK
GSVLKELKDASKKVKNIYLAADPDREGEAIAWHLAHVLDVDASKACRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EISAFVPEEYWTITAVLKIGGTEFEAKFYKYRGEKLELANEQRVGEILKALEGAEFKVGE
VKEKERLRHPAAPFTTSSLQQEAARKLNFRAAKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIATSAQEEAKEYIVDKYGESYAPEVARQYSKKAAGAQDAHEAIRPTSALRDPESV
KSFMSRDQFRLYKLVWERFMASQMSSAVLDTMSVDIPAGEVTFRAVGSKIRFPGFMKVYV
EGNDDGTTEDNKFLPPLKTGDVLQKEAIDPKQHFTQPPPRYSEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEDKKFIPTELGELVLEQMEQFFPEILNVEFTAHMEEDLDHVEEG
TEDWVRVLSEFYGPFEKRLEVAEKEMKEIEIEDEVSDEICDKCGRPMVYKLGRFGKFLAC
SGFPECRNTKPIIKDIGVTCPKCKEGHIVERRSKKGRVFYGCDRYPECDFVSWDRPSPIP
CPKCGSLLVEKRNKQGGKLQCTACDFVQPIEENEDAAGE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggctgattctctcgttatcgtggagtcgcctgcaaaggcgaagacgatcggaaaatat
ttgggcagtaaatacatcgtgaaggcttctatggggcatgttcgcgatttgccgaaaagc
caaaccggggttgacgtggaaaatgacttcaatcccaaatatataaccatccgtggaaaa
ggttcagtattgaaggaattgaaagacgcaagtaaaaaagtgaaaaatatttatctggcg
gctgaccccgatcgcgaaggggaagcgattgcctggcatcttgcccatgtgctcgatgta
gatgcctcgaaggcatgccgcgtagtattcaatgagattacgaagcaggcggttaaggat
gcctttaaaactccgcgcaagatcaatatggatctggtcaacgcccagcaggcgagaaga
attctagaccgtctggtcggttataagattagccccctattgtggaagaaggttaaaaag
ggattatccgctggccgtgtgcaatcggtagctgtaaaaattattttagaccgcgaaaat
gaaatttcggcttttgtcccagaggaatactggacgattacagctgtcttgaaaattgga
ggcactgaatttgaggcgaagttttataaataccgcggagagaagctcgagcttgcgaat
gagcagcgggttggagagattctcaaagcgctggagggcgccgagttcaaggttggcgaa
gtgaaagagaaggagcgtcttcgtcatcctgctgcaccttttacgacgagttccctacag
caggaggcggcccgtaagttgaatttccgtgcggctaagacgatgtctgttgcccagcaa
ttatatgaaggcgttgatttaggcaaggagggcacggtcggtctaattacttatatgcgt
acagattcgacgcggattgctacttcggcacaagaggaagccaaggaatatatcgtggat
aaatacggagagagttacgctccagaagtcgcacggcaatattcgaagaaggcggccgga
gctcaggatgcccatgaagcgattcgtcctacatcagcactacgtgatccagaatctgtg
aagtcatttatgagtcgtgatcagttccgcttatataaactggtttgggaacgattcatg
gctagccagatgtcttcggcggtactcgatacgatgtccgtcgatattcctgcaggtgaa
gtgactttccgggccgttggctcgaagattcgtttcccgggtttcatgaaggtctatgtg
gaaggcaatgatgacggaacgacggaagacaataagttcctgcctccgctgaaaaccggg
gatgtgctacagaaggaagctattgatccgaagcagcatttcactcagccacctccgcga
tatagcgaagcacggcttgttaagacgcttgaagagcttggcataggacgcccgagtacg
tatgcgccgacgctggagacgatccagaagcgtgggtatgtggcgattgaagataagaag
ttcatcccgactgaattgggtgagctagttctggagcagatggaacagttcttcccggaa
attctcaacgttgaatttaccgcccatatggaggaagatcttgaccatgtcgaggaaggt
actgaagactgggttcgcgtcctgagcgagttctacgggccttttgagaagcggctagaa
gttgcggagaaagagatgaaggagatcgagattgaagatgaggtgtccgatgaaatctgc
gataagtgcggaagaccgatggtctacaaattgggcagattcggcaagtttctcgcctgc
tctggatttccggaatgccgtaatacgaagccgatcatcaaggatatcggagtaacttgt
ccgaaatgtaaggaagggcatattgttgagcgccgtagtaaaaagggcagagtgttctac
ggttgcgatcgttatccggagtgcgactttgtatcctgggataggccatcaccaatccct
tgccctaaatgtggatcgctcctcgtagagaagcgcaataaacagggcgggaagctgcaa
tgcaccgcttgtgattttgtacagccgattgaggagaacgaggacgctgcgggcgaataa
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