Paraphotobacterium marinum: CF386_00360
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Entry
CF386_00360 CDS
T05093
Name
(GenBank) excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CF386_00360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmai03400
]
CF386_00360
DNA repair and recombination proteins [BR:
pmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CF386_00360
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH
HHH_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ASK77647
UniProt:
A0A220VB59
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Position
large:complement(62771..64624)
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AA seq
617 aa
AA seq
DB search
MSVIRFNFSQFLKNITSSCGVYIMYNTREEVIYVGKAKNLKNRLSSYFRKKQTSSKTEVL
VSQINKIDVTVTSSEVEALLLEQNLIKKYLPKFNVLLRDDKSYPYIYISNDTYPRISIQR
NQKFPKGEYFGPYPNVYAVRENINLIQDIFKVRLCSNNFFSNRKRPCLKYQVDKCSAPCV
KGYISDKDYIESINLTKIFLKGNRTDLLNKIVTKMNAYSEQMEFEKAAKCRDQIQNIHKL
QAEQIVINTNYKASSVDVFVMEQSKNITCFQILFYRDNKVMGTQSYFPYVPKKENEFEII
SSFINQFYTNRAEVKEIPSTILLDSNLSSPEINEIKSNLLLLTDRKNLTIKRIFSKEESK
LVKFTRLNILNAIKNKTKSIGFYERNFVAFKSFLECEKIFRIECYDISHLQGKHTVASSV
VFGEDGPLKKEYRSYNIDNITPGDDYAAMRQLIFKRFNKKLTKDKIPDIILIDGGRGQLN
SVLGAFNEINLDIYQNILFIGVAKDISRKDGLETLKFTDRPDISLPDDSDALHLIQFIRD
ESHRFALKNHRKKRQKDISKSILDDIPGIGVKRKIHLLQYIGGLQELKKATLADLNQVPG
ISSKLAKLIYDYLKPEK
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttataagatttaatttcagtcaatttctgaaaaatatcacatcttcttgtggt
gtttatattatgtataatacccgagaagaagtaatttatgtgggtaaagcaaaaaatcta
aaaaatagattatcaagttactttagaaaaaaacaaacaagctccaaaactgaagtctta
gttagtcagattaataaaattgatgttacagttacatcatctgaagttgaagcgttgttg
ttagagcaaaacttaatcaaaaaatatttaccaaagtttaatgtgctattaagagatgat
aaatcttatccgtacatatatatcagtaatgacacataccctagaattagtattcaaaga
aaccaaaagtttccaaaaggagagtattttggtccgtacccaaatgtctatgctgttaga
gaaaatattaaccttattcaagatatttttaaagttaggttatgttccaataattttttt
agtaacagaaaaaggccctgcttaaaatatcaagttgataagtgcagcgcaccatgtgtt
aagggatatatctccgataaagattatattgaatctattaatttaactaagattttttta
aaaggtaatagaacggatcttttaaataaaattgttaccaaaatgaatgcttatagtgag
caaatggaatttgaaaaggcggctaaatgtagagatcagattcaaaatattcataaatta
caagcagaacaaattgtaattaatactaattataaagcaagttccgttgacgtttttgtt
atggagcaatcaaaaaatataacatgttttcaaatcctattttatcgtgacaacaaagtt
atgggaacacaaagttattttccttatgtgccaaaaaaagaaaatgaatttgaaattata
tcaagttttataaatcaattttatacgaatagggcagaagttaaagagattccctcaact
attttattagatagtaatttatcatcccctgaaataaatgaaataaaatcaaatcttctg
ttactaactgatagaaaaaacttaactattaagaggattttttcaaaagaagaaagtaag
ttagttaaatttactcgattaaatatattaaacgctattaaaaacaagacaaaaagtatt
ggtttttatgagagaaactttgtagcctttaaaagttttttagaatgtgaaaaaattttt
agaattgagtgttatgatattagtcatttacaaggtaagcatacggttgcttcctctgtc
gtttttggagaagatggaccattaaaaaaagaatatagaagctataatatagataatatt
acgccaggtgatgattatgcagctatgcgacagttaatttttaaaagatttaataaaaaa
ttaactaaagataaaattcctgatattatattaattgatggtggaagaggacaattaaac
tcagttcttggcgcatttaatgaaattaatttggatatttatcaaaatattttatttatt
ggggtagctaaagatatctcaagaaaagatggtcttgaaactttaaaatttactgatcga
ccagatatttcattaccggatgattctgatgcgcttcacttaattcaatttatcagagat
gagagtcatcgttttgctttgaagaatcacagaaaaaagaggcaaaaagatattagtaaa
agcattcttgatgatatacctggtattggagtaaaaagaaaaatacatttgttgcagtat
attggtggtttgcaagaattaaagaaagcaactttagctgatttaaatcaggttcctggg
attagctccaagcttgcaaaactgatttatgattatttaaaacctgaaaaataa
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